Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1275 ATGATAAGTTCACACTCCGAAAAATTGCTTGAAATGAAAGCAGAGGCTCTTTCAATGCTGTGTAGATATGAGGAGGTGATTCAGCTGTGTGACGAGACCCTTGTTTCTGCCGAGAAGAATTCTTATCCATTTGATGCCAGTACCCAAGTCGCATATATGGATAATGCAGAAAGCTCAACAAGATTGTACTTCAGATTATGGCGGTGCTCAATGGTGGTTAAAGCCTACTTTTACCTAGGAAAGCTTGAAGAAGGTCTTTCTTTCCTGGAGAAGCAAGAGGAAAAGTTATCTGCCATAAACAAGAGTGGAGGCAAGGTTTTGGAACCACTCATACCACTAGTTGTAACTATACAAGAACTTTTGCGTCACAAGGTCGCAGGGAATGAAGCATTTCAGGCTGGAAGGCACACAGAAGCTGTTGAACATTATACATCTGCTTTATCTTGCAATGTGGAGTCTCGTCCATTTGCAGCTGTCTGTTACTGTAACCGTGCTGCTGCATATAAAGCATTAGGTCAAATAACTGATGCTATTGCAGATTGCAGTCTAGCTATAGCACTCGATGGAAATTATTTGAAGGCACTTTCTAGGCGTGCAACACTATATGAAATTATTAGGGATTATGATCAAGCAGCAAGTGATCTTAGGAGACTTGTCTCCCTCCTTAGTAAGGAAGTGGAGGATAGTACCAATCAACCTGGGTTATCTGATCGGTCAACTAGTTATACTAATGAATTGAAACAAAATCGTATTCGGCTTTATGAAATAGAGGAAGAAGCCAGAAAGGAGATCCCTCTTGATATGTACCTCATTTTGGGAGTTGAGCCATCTGCTTCACCATCTGAAATCAAGAAGGCCTATCGGAAAGCAGCACTTAGACATCATCCAGACAAAGCTGGTCAATCTTTGAGAGATGATGGGATATGGAAGGATATTGCTGAAGAAGTACATAGAGATGCAGATAGGCTTTTCAAAATAATTGGCGAGGCGTATGCTGTCCTATCGGACTCTGCCAAGCGGGCACGATATGATGCGGAAGAAGAAATGAGAAATGCCCAAAAGAAACGCCATGGACCTATGCCTAGACCTAGTGCGGATGCCCAGTATTACCCATTTGAACAAAGTGGCAGGAGATCATGGAGAGAGGGTCGGAGATCATACGGTAATTCTGTTCCTCAGTTTTGA 1185 0.4262 MISSHSEKLLEMKAEALSMLCRYEEVIQLCDETLVSAEKNSYPFDASTQVAYMDNAESSTRLYFRLWRCSMVVKAYFYLGKLEEGLSFLEKQEEKLSAINKSGGKVLEPLIPLVVTIQELLRHKVAGNEAFQAGRHTEAVEHYTSALSCNVESRPFAAVCYCNRAAAYKALGQITDAIADCSLAIALDGNYLKALSRRATLYEIIRDYDQAASDLRRLVSLLSKEVEDSTNQPGLSDRSTSYTNELKQNRIRLYEIEEEARKEIPLDMYLILGVEPSASPSEIKKAYRKAALRHHPDKAGQSLRDDGIWKDIAEEVHRDADRLFKIIGEAYAVLSDSAKRARYDAEEEMRNAQKKRHGPMPRPSADAQYYPFEQSGRRSWREGRRSYGNSVPQF* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1275 394 SUPERFAMILY TPR-like 123 221 IPR011990 GO:0005515
Amo13g1275 394 Pfam DnaJ domain 267 344 IPR001623 -
Amo13g1275 394 Gene3D Tetratricopeptide repeat domain 119 244 IPR011990 GO:0005515
Amo13g1275 394 Coils Coil 335 355 - -
Amo13g1275 394 MobiDBLite consensus disorder prediction 345 361 - -
Amo13g1275 394 CDD DnaJ 267 336 IPR001623 -
Amo13g1275 394 ProSiteProfiles dnaJ domain profile. 267 347 IPR001623 -
Amo13g1275 394 ProSitePatterns Nt-dnaJ domain signature. 324 343 IPR018253 -
Amo13g1275 394 PANTHER HEAT SHOCK PROTEIN DNAJ WITH TETRATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 2 391 - -
Amo13g1275 394 SMART dnaj_3 266 339 IPR001623 -
Amo13g1275 394 MobiDBLite consensus disorder prediction 345 394 - -
Amo13g1275 394 PRINTS DnaJ domain signature 287 302 IPR001623 -
Amo13g1275 394 PRINTS DnaJ domain signature 269 287 IPR001623 -
Amo13g1275 394 PRINTS DnaJ domain signature 319 339 IPR001623 -
Amo13g1275 394 Gene3D DnaJ domain 254 361 IPR036869 -
Amo13g1275 394 SMART tpr_5 120 153 IPR019734 GO:0005515
Amo13g1275 394 SMART tpr_5 192 225 IPR019734 GO:0005515
Amo13g1275 394 SMART tpr_5 7 40 IPR019734 GO:0005515
Amo13g1275 394 SMART tpr_5 158 191 IPR019734 GO:0005515
Amo13g1275 394 SUPERFAMILY Chaperone J-domain 231 343 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1275 Amo-Chr13 16653439 16657979 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1275 269 345 C2H2 Transcription Factor Family AT1G74250 36.364 4.05e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1275 K09527 - gmx:100790770 602.053