Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1237 ATGATTCCAAGAGGAGCCACCGTGACAGGGGCGGGGAAAAGGACAAGGATAGAAGCAATGGGAAGCATAGGGATAGGGAGAAGAGGGACCGCGACCGGGATAGCAGAAGGCATGATAGAGATCATAGTGAAGGAGAGAAAACCTACTCATGAAGAGGAGATAGAGGAAGAACACAAGAGATTGGATGAAGAAATGGAAAAGAGGAGGAGAAGAGTTCAGGAGTGGCAAGAGCTGAGGAGGAAGAAGGAAGAAGCTGAGAGAGAAAAGCAGGGTGAAGCAAGTGCTAGTGAACCAAAGTTGGGAAAGGCCTGGACCCTTGAAGGGGAATCTGACGATGAAGAAGCAACTGGTACAGGGAAGCCAGATACTGCGATGGATGTAGATGAAGATGAAAAACCTGTTGATAAAGAACCTGGGGATCCTATGGTGGCAGATGGTGATAATGGGGCAGTTACGTCTGATTTACAAGATGGAACTGCTGGTGCTCCTGAGGATGAGGAAATTGATCCATTGGATGCCTTCATGAATTCTATGGTTCTACCTGAAGTTGAAAAGCTGAACAACACTGTTTGCTCTTCAATACCTGATAAAACTAATGACAAGAAACTCAAGGATAGAGGGGATGAGCAGGGTCGTAGTGGACAGGCAAGGAAAGTTTCCAATAATAAATCGATTGGAAGAATAATTCCTGGTGAAGACTCTGACTCTGATTATTCAGATCTTCAAGTTGACGATGACGACATTGAAGAAAATGATGAGGAGTTTATGAAAAGAGTGAAGAAGTCAAAAGCTGATAAGCTGTCTATAGTTGACCATTCAAAGATTGATTATCAACCTTTCAAGAAAAATTTCTACATTGAAGTGAAGGATGTCTCGAGGATGACTCCTGAAGAAGTTGCTGCATACCGGAAGGAGCTGGAGTTGAAGATACATGGAAAGGATGTTCCAAAGCCAGTAAAATCATGGCATCAGACTGGACTTACTAGCAAAATTTTAGAGACAATAAGAAAGCTTAACTATGAAAAGCCGATGCCTATTCAAGCCCAGGCACTGCCTGTAATAATGAGTGGTCGAGACTGCATTGGTATTGCTAAAACTGGATCAGGCAAAACACTTGCTTTTGTTTTGCCTATGTTGAGGCACATCAAGGATCAGCCACCAGTTGTTACTGGAGATGGACCAATTGGGCTTATCATGGCTCCTACAAGGGAGCTTGTTCAACAGATTTACAGTGATATAAAGAAGTTTGGGAAGGTACTGGGTCTAAGATGTGTACCTGTGTATGGAGGTTCTGGTGTTGCTCAACAAATTAGTGAGTTGAAGCGTGGAGCTGAGATAGTGGTTTGTACTCCAGGTAGGATGATTGACATACTATGTACCAGTGGTGGCAAAATAACTAACCTGCGCAGGGTTACTTATTTGGTCATGGATGAGGCTGATAGAATGTTTGACATGGGGTTTGAACCCCAAATCACAAGAATTGTTCAGAATATCCGACCAGATCGTCAAACTGTTCTATTTTCTGCCACTTTCCCCCGCCAGGTTGAAATTCTCGCCCGCAAGGTTCTAAATAAACCTGTTGAAATACAAGTTGGTGGCAGAAGTGTTGTGAACAAGGACATAACACAGCTGGTGGAGTTGAGACCAGAAAAAGAAAGATTTCATAGGCTATTAGAGATATTGGGTGAATGGTATGAGAAAGGAAAGATTTTGATTTTTGTCCAGTCACAGGAAAAATGTGATGCTTTGTTCAAGGATTTGCTAAAGTCTGGTTATCCTTGCTTATCTCTTCATGGAGCTAAGGACCAGACAGATCGTGAATCCACAATTGCTGATTTCAAAAGCAATGTCTGCAACATGTTGATTGCAACTAGTATTGCTGCCAGGGGACTAGATGTCAAGGAGCTTGAATTGGTTATCAATTTTGATGTTCCTAATCACTATGAAGATTATGTTCATCGTGTTGGCCGCACTGGCAGAGCAGGCCGAAAGGGTTGCGCTATTACTTTTATTTCAGAGGAAGAAGCAAGATATGCACCTGATTTGGCAAAAGCATTGGAGCTATCTGAGCAAGTTGTTCCTGATGACCTGAAGGCACTTGCTGATGGCTTTATGGCAAAAGTGAAACAAGGGCTTGAGCAGGCTCATGGAACTGGTTATGGAGGCAGTGGCTTTAAATTTAATGAAGAAGAAGATGAGGAGAGGAGAGCAGCGAAGAAAGCTCAAGCCAAGGGATATGGGTTTGAAGAGGATAAATCAGATTCGGAAGATGAAGATGAAAATATTAGGAAGTCGGGAGGTGACATCTCACAGCTTGCTCATATTCTTGCTGCCTCAAAAGGCACTGTCCCTGCTATACCTAGCCCCATCTCTCCTGCTCAGCTGATTTCTAATGGTGGACTAACTGTTCCGTTGCCAGCTGTTCTTGGTAATCTCCAAACTACTACAGTTTTGCCTACAGGGCTTCCCCTTACTACAAATGATGGGGCAGCTCGGGCAGCATTAGCTGCTATTAACCTGCAGCACAACTTAGCTAAGATACAGTCTGAAGCATTGCCTGAGCATTATGAAGCTGAACTAGAGATAAATGATTTCCCCCAAAGTGCTCGGTGGAAAGTCACACACAAGGAAACTTTGGGTCCAATTTCTGAGTGGACAGGAGCCGCTATTACCACCAGGGGACAATATTTCCCACCTGGTAAAATTGCGGGACCTGGGGAACGCAAGCTCTACTTGTTCATTGAGGGTCCTAGTGAGCAGTCTGTTAAGAGAGCTAAAGCAGAGTTGAAGCGTGTTTTGGAAGACATCACAAATCAAGCTTTACAACTTCCTGGTGGATCTCAACCTGGCAAATACTCTGTTGTTTAA 2868 0.4369 MIPRGATVTGAGKRTRIEAMGSIGIGRRGTATGIAEGMIEIIVKERKPTHEEEIEEEHKRLDEEMEKRRRRVQEWQELRRKKEEAEREKQGEASASEPKLGKAWTLEGESDDEEATGTGKPDTAMDVDEDEKPVDKEPGDPMVADGDNGAVTSDLQDGTAGAPEDEEIDPLDAFMNSMVLPEVEKLNNTVCSSIPDKTNDKKLKDRGDEQGRSGQARKVSNNKSIGRIIPGEDSDSDYSDLQVDDDDIEENDEEFMKRVKKSKADKLSIVDHSKIDYQPFKKNFYIEVKDVSRMTPEEVAAYRKELELKIHGKDVPKPVKSWHQTGLTSKILETIRKLNYEKPMPIQAQALPVIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVTGDGPIGLIMAPTRELVQQIYSDIKKFGKVLGLRCVPVYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVELRPEKERFHRLLEILGEWYEKGKILIFVQSQEKCDALFKDLLKSGYPCLSLHGAKDQTDRESTIADFKSNVCNMLIATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEEARYAPDLAKALELSEQVVPDDLKALADGFMAKVKQGLEQAHGTGYGGSGFKFNEEEDEERRAAKKAQAKGYGFEEDKSDSEDEDENIRKSGGDISQLAHILAASKGTVPAIPSPISPAQLISNGGLTVPLPAVLGNLQTTTVLPTGLPLTTNDGAARAALAAINLQHNLAKIQSEALPEHYEAELEINDFPQSARWKVTHKETLGPISEWTGAAITTRGQYFPPGKIAGPGERKLYLFIEGPSEQSVKRAKAELKRVLEDITNQALQLPGGSQPGKYSVV* 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1237 955 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 467 701 IPR027417 -
Amo13g1237 955 MobiDBLite consensus disorder prediction 104 142 - -
Amo13g1237 955 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 256 678 IPR027417 -
Amo13g1237 955 Coils Coil 919 942 - -
Amo13g1237 955 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 351 529 IPR014001 -
Amo13g1237 955 CDD SF2_C_DEAD 541 671 - -
Amo13g1237 955 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 320 348 IPR014014 GO:0003724
Amo13g1237 955 Gene3D - 272 529 IPR027417 -
Amo13g1237 955 Pfam DEAD/DEAH box helicase 345 516 IPR011545 GO:0003676|GO:0005524
Amo13g1237 955 MobiDBLite consensus disorder prediction 726 764 - -
Amo13g1237 955 CDD DEADc_DDX46 309 530 - -
Amo13g1237 955 Coils Coil 47 95 - -
Amo13g1237 955 SMART ultradead3 339 544 IPR014001 -
Amo13g1237 955 MobiDBLite consensus disorder prediction 197 213 - -
Amo13g1237 955 MobiDBLite consensus disorder prediction 47 95 - -
Amo13g1237 955 MobiDBLite consensus disorder prediction 719 764 - -
Amo13g1237 955 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 540 701 IPR001650 -
Amo13g1237 955 MobiDBLite consensus disorder prediction 47 167 - -
Amo13g1237 955 Pfam Helicase conserved C-terminal domain 554 662 IPR001650 -
Amo13g1237 955 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 475 483 IPR000629 -
Amo13g1237 955 PANTHER LOW QUALITY PROTEIN: DEAD-BOX ATP-DEPENDENT RNA HELICASE 42-LIKE 35 776 - -
Amo13g1237 955 MobiDBLite consensus disorder prediction 187 242 - -
Amo13g1237 955 SMART helicmild6 581 662 IPR001650 -
Amo13g1237 955 Gene3D - 530 704 IPR027417 -
Amo13g1237 955 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 35 776 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1237 Amo-Chr13 16134529 16138783 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1237 307 682 Eukaryotic Initiation Factors Gene Family AT3G19760 31.565 3.18e-58 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1237 K12811 - gmx:100784306 1450.65