Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1233 ATGTCGAACCGTCGTTCATCGTTTTCTTCCTCAACGACGTCGTCTTTGGCAAAACGCCATGCATCGGCGTCGTCAACCGAAAACCACAACGCGGGAAAGGTTTCCCTTGCGAAGAAGCGAGCGCCGCTAACAAACCTCACCAATAACATTTCTCGACGCTCTTCTCTGGTACCTTGTGCTACTAAAGTTGCTAAGACGAAGAAAGAGGCTTCATCATGTAACACTACTACAACTTGTTCTTCAATTTCAAGCAACAAGATACCGATTTTGCAGAGTGCTGTAAAGTGCAATGCTGTTGTTTTTCCGAAGCCTAGTTATGTCTCTGCAAGGGAAGAAGGTGATGCTAAGAAAGTTGTTGTTGCTGTTGCTGCTGCTGCTGCCCCTGTTAGTGTTCATATCTCAAAAATGGATYTTTCTCCTTGTAAATCAGATGGGGCATCTGTTTCCATGTCTMTGGATGAGACCATGTCTTCTTGTGAATCTTTCAAGAGCCCTGACATTGAGTATTTGGACAACAATGATATCGCGCCGGCCGTTGARTCAATTCAGAGGAAGACATTCAGCACCCTCAACATTTCTGATACTCCAGAGCCACCAGCAGGGAACATATGCAGTAGAGACATACTTGTTGAGTTGGAGAAAGATGACAAAGTTGTGAATGTTGATAACAACTTCATGGATCCCCAGCTTTGTGCAACATTTGCTTGTGATATATACAAGCACCTGCGTGCATCTGAGGCAAAGAAAAGACCTTCCACGGACTTCATGGAGAGTGTTCAGAAGGACATAAATCCCAGCATGCGTGCTATATTGATTGATTGGCTTGTTGAGGTAGCCGAAGAGTATCGATTGGTACCTGATACATTGTATTTGACAGTGAACTACATAGATAGGTATCTTTCAGGGAATCCAATGAACAGGCAAAAATTACAATTACTTGGTGTTGCTTCCATGATGGTTGCCTCTAAATATGAGGAGATTTGTGCACCCCAGGTAGAGGAATTTTGTTACATCACCGACAACACATACTTCAAAGAAGAGGTTTTGCAAATGGAATCTGCTGTCTTGAATTATCTGAAGTTTGAAATGACAGCTCCAACAATTAAGTGTTTCTTAAGACGGTTCGTTCGTGCAGCTCAAGGAGTCAGTGAGACCCCTTCGTTGCAACTAGAGTGCTTGACAAACTACATTGCCGAATTGTCTTTGTTGGAGTACAGTATGCTTTGTTATGCTCCGTCACTAATAGCTGCTTCTGCAATTTTTCTAGCCAAGTTTATACTCTCCCCCTCAACCAAACCATGGAATGCTACATTGAAGCACTATACACAATACCAGCCRTCTGATTTGTGTAGTTGTGTAAGGGATCTCCATCGACTTTGTTGCAACAATCCTAACTCCAATTTGCCTGCAATTAGGGAAAAGTATAGTCAGCACAAGTACAAAAATGTGGCCAAGAAGTGTTGCCCTTCCTCAATACCTTCAGAATATTTTCAGAATTGA 1500 0.426 MSNRRSSFSSSTTSSLAKRHASASSTENHNAGKVSLAKKRAPLTNLTNNISRRSSLVPCATKVAKTKKEASSCNTTTTCSSISSNKIPILQSAVKCNAVVFPKPSYVSAREEGDAKKVVVAVAAAAAPVSVHISKMDXSPCKSDGASVSMSXDETMSSCESFKSPDIEYLDNNDIAPAVESIQRKTFSTLNISDTPEPPAGNICSRDILVELEKDDKVVNVDNNFMDPQLCATFACDIYKHLRASEAKKRPSTDFMESVQKDINPSMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNPMNRQKLQLLGVASMMVASKYEEICAPQVEEFCYITDNTYFKEEVLQMESAVLNYLKFEMTAPTIKCFLRRFVRAAQGVSETPSLQLECLTNYIAELSLLEYSMLCYAPSLIAASAIFLAKFILSPSTKPWNATLKHYTQYQPSDLCSCVRDLHRLCCNNPNSNLPAIREKYSQHKYKNVAKKCCPSSIPSEYFQN* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1233 499 SMART Cyclin_C_2 366 489 IPR004367 -
Amo13g1233 499 PANTHER CYCLINS 28 498 IPR039361 -
Amo13g1233 499 Gene3D - 237 485 - -
Amo13g1233 499 PANTHER CYCLIN-A1-1 28 498 - -
Amo13g1233 499 CDD CYCLIN 267 356 IPR013763 -
Amo13g1233 499 Pfam Cyclin, C-terminal domain 366 487 IPR004367 -
Amo13g1233 499 SUPERFAMILY Cyclin-like 227 363 IPR036915 -
Amo13g1233 499 Pfam Cyclin, N-terminal domain 237 363 IPR006671 -
Amo13g1233 499 SUPERFAMILY Cyclin-like 366 491 IPR036915 -
Amo13g1233 499 PIRSF Cyclin_A_B_D_E 1 497 IPR039361 -
Amo13g1233 499 ProSitePatterns Cyclins signature. 268 299 IPR006671 -
Amo13g1233 499 Gene3D - 251 364 - -
Amo13g1233 499 MobiDBLite consensus disorder prediction 1 32 - -
Amo13g1233 499 CDD CYCLIN 364 457 IPR013763 -
Amo13g1233 499 MobiDBLite consensus disorder prediction 1 39 - -
Amo13g1233 499 SMART cyclin_7 273 357 IPR013763 -
Amo13g1233 499 SMART cyclin_7 370 458 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1233 Amo-Chr13 16066879 16070369 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1233 1 499 Core Cell Cycle Gene Families AT1G44110 59.406 0.0 554
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1233 K06627 - gmx:100789565 700.664