Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1212 ATGGCACCATCATTAGCAGCAACTTATTCCGTTGATCCAAAAGAAACCAACTTCATCAACAAAAGTTACCAAACTACCCACATCTTCAAATCAAAATTACCAGACATACCCATCAACAATACCATTCCTCTCCACACTTATTCGTTTCAAAAGCTCCCCCAAGTCTACAACCGCCCGTGTCTCATCACGAGCGATGGCAAGGAGTACACCTATGGTGATGTCCACCGCGCTTCTAGAAGCTTGGCATTGGGCCTTTTCAACCTTGGAATCCGCAAAGGTGACATCATAATGATCCTACTCCCAAACTCGCCGGAATTCGTGTTCTCCTTTTGGGCTGCTTCTATGCTGGGCGCAGCTTCCACCCTTGCCAATCCTTCTTACACATCTCTTGAAATCACGAAGCAGCTCAAAGCCACCAAAGCCAAAATCGTCATCACACATGCCATGCACGTGCATAAGCTCAAACAAGATCAACCAGAAGAAAACACATTCACAGTGATAACTGTGGACAAGCCACCAGAGAAGTGCATGAGTTTCTCGACGGTTTCCAGAAATGAAGGAGAGCTGCCAGAGGTGGATATTAACCCTGACGACATGGTGACACTGCCATTTTCGTCCGGCACGACGGGGTTATCAAAGGGTGTGGTTCTAACACACCGGAGTCTGGTAACAAACGTGGCTCAGCAGGTGGAGGGAGAGAACCCTAACTTGCACCTGAAGGAAGAGGATGTAGTGCTTTGTGTGTTACCCTTGTTTCACATTTACGCACTACACTGTGTGATGTTATGCTCTATGAGAGTAGGGTGTAAGGTGTTGCTTATGGAGAAGTTTGAGATGAGGGCGATGTTGGAAGTTGTGGAGAAGCACAGGGTATCAGTAGTGATGGCAGTGCCGCCGTTGGTGGTGGCACTGTCAAAGAACCCGGCAGTGGAGGAGTATGAGCTTAGCTCCATCCGGATGGTGATGTCTGGAGGTGCCTCTCTTGCAAATGACATTGAGGAGGCTTTTCGTAGTAGGTTGCCTCAAGCAATCCTTCGACAGGCTTTAGGAATGACAGAATCAGGACCAGTGATATCAATGTCATTAAGTTTTGCAAAGTATCCAATGAAAACTAAATCAGGATCGTGTGGCAGTGTCATTAGAAATGCAGAAATGAAGATCATTGATCCTCTAACTGGCTCTTCTCTCCCTCGTAATATGTCGGGTGAAATTTGCATCCGAGGTCCACAAATTATGAAAGGATACCTGAATAATGAGAAGGCGACAGCAGAAGCTATTGATGAAGAGGGTTGGCTTCATACAGGTGACATTGGGTATGTGGATGATGATGATGAGCTTTTCGTTGTTGATAGACTCAAGGAGCTCATCAAATTCAAAGCCTTTCAGGTTGCTCCGGTAGAACTTGAAGTCCTTCTTATGACCCACCCTTCCATTCAAGATGCTGCTGTTGTCCCGCAAAAAGACGATGTAGCTGGTGAAGTTCCAGTTGCTTTTGTGGTGAGGTCATCAAATGATTCTATTACTGAAGATGCTGTGAAAGACTTTATAGCTAAACAGGTAGTATTTTACAAGAGGCTACATAGAGTAATTTTCATTGACGCAATTCCAAAATCTTCAATCGGCAAGATATTAAGAAAAGAACTCAAAGCAAAGCTCGCTAGCTACTATTAA 1671 0.4512 MAPSLAATYSVDPKETNFINKSYQTTHIFKSKLPDIPINNTIPLHTYSFQKLPQVYNRPCLITSDGKEYTYGDVHRASRSLALGLFNLGIRKGDIIMILLPNSPEFVFSFWAASMLGAASTLANPSYTSLEITKQLKATKAKIVITHAMHVHKLKQDQPEENTFTVITVDKPPEKCMSFSTVSRNEGELPEVDINPDDMVTLPFSSGTTGLSKGVVLTHRSLVTNVAQQVEGENPNLHLKEEDVVLCVLPLFHIYALHCVMLCSMRVGCKVLLMEKFEMRAMLEVVEKHRVSVVMAVPPLVVALSKNPAVEEYELSSIRMVMSGGASLANDIEEAFRSRLPQAILRQALGMTESGPVISMSLSFAKYPMKTKSGSCGSVIRNAEMKIIDPLTGSSLPRNMSGEICIRGPQIMKGYLNNEKATAEAIDEEGWLHTGDIGYVDDDDELFVVDRLKELIKFKAFQVAPVELEVLLMTHPSIQDAAVVPQKDDVAGEVPVAFVVRSSNDSITEDAVKDFIAKQVVFYKRLHRVIFIDAIPKSSIGKILRKELKAKLASYY* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1212 556 SUPERFAMILY Acetyl-CoA synthetase-like 41 554 - -
Amo13g1212 556 CDD 4CL 33 548 - -
Amo13g1212 556 Gene3D - 19 452 IPR042099 -
Amo13g1212 556 ProSitePatterns Putative AMP-binding domain signature. 202 213 IPR020845 -
Amo13g1212 556 PANTHER 4-COUMARATE--COA LIGASE 3 27 551 - -
Amo13g1212 556 Pfam AMP-binding enzyme C-terminal domain 467 542 IPR025110 -
Amo13g1212 556 Gene3D - 453 554 IPR045851 -
Amo13g1212 556 Pfam AMP-binding enzyme 57 458 IPR000873 -
Amo13g1212 556 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 27 551 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1212 Amo-Chr13 15842724 15846353 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1212 1 520 Monolignol Biosynthesis Gene Families AT1G51680 54.820 0.0 566
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1212 K01904 - gmx:100790396 718.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g1212 13 15842724 15846353 Amo13g1212 13 15842724 15846353 ECH