Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1211 ATGGCACCATCATTAGTAGCAACTTATTCCGTTGATCCAAAAAAAACCAACTTCATCAACCAAAGTTACCAAACTACCCACATCTTCAAATCAAAATTACCAGACATACCTATCAACAATACCATTCCCCTCCACACTTATTCGTTTCAAAAACTCCCCCAAGTCTACAACCGCCCGTGTCTCATCACGAGCGATGGCAAGGAGTACACCTATGGTGATGTCCACCGCGCATCTAGAAGCTTGGCCATGGGCCTTTTCAACCTTGGAATCCGGAAAGGTGACATCATAATGATCCTACTCCCAAACTCGCCGGAATTCGTGTTCTCCTTTTGGGCTGCTTCTATGCTGGGGGCAGTTTCGACCCTTGCCAACCCTTCTTACACATCTCTTGAAATCACGAAGCAGCTCAAAGCCACCAAGGCCAAAATCGTCATCACACATGCCATGCACGTGCATAAGCTCAAACAAGATCAACAAGAAGAAAACACATTCACAGTGATAACTGTGGACAAGCCACCAGAGAAGTGCATGAGTTTCTCGACGGTTTCCAGAAATGAAGGAAAGCTGCCAGAGGTGGATATTAACCCTGACGACATGGTGACACTGCCATTTTCCTCCGGCACGACGGGGTTATCAAAGGGTGTGATTCTAACACACCGGAGTCTGYTSACAAACGTGGCTCAGCAGGTMGAGGGAGAGAACCCTAACTTGCARCTGAAGGAAGAGGATGTAGTGCTTTGTGTGRTACCWTTGTTRCACATTTACGCACTACACTGTGTGATGTTATGCTCTATGAGAGTAGGGTGTAAGGTGTTGCTTATGGAGAAGTTTGAGATGAGGGCGATGTTGGAAGTTGTGGAGAAGCAGAGGGTATCAGTAGTGATGGCAGTGCCGCCGTTGGTGGTGGCACTGTCAAAGAACCCGGCAGTGGAGGAGTATGAGCTTAGCTCCATCAGGATGGCTTTGGGAATGACAGAATCAGGACCAGTGATATCAATGTCATTAAGTTTTGCAAAATATCCAATGACAACTAAATTAGGATCATGCGGTACTGTCATCAGAAATGCAGAAATGAAGATTATTGACCCTCTAACAGGCTCTTCTCTCTTTTATAATACTCCGGGTGAAATTTGTATCCGAGGTCAACAAATTATGAAAGGATACCTGAATAATGAGAAGGCGACAGCAGAAGCTATTGATGAAGAGGGTTGGCTTCATACAGGTGACATTGGGTATGTGGATGATGATGATGAGCTTTTCGTTGTTGATAGACTCAAGGAGCTCATCAAATTCAAAGCCTTTCAGGTTGCTCCGGTAGAACTTGAAGTCCTTCTTATGACCCACCCTTCCATTCAAGATGCTGCTGTTGTCCCACAACAAGATGATGTAGCTGGTGAAGTTCCAGTTGCTTTTGTGGTGAGGTCATCAAATGACCCTATTACTGAAGATGCTGTAAAGGACTTTATAGCTAAACAGGTAGTATTTTACAAGAGGCTACATAGAGTAATTTTCATTGACGCAATCCCAAAATCTTCAATGGGCAAGATATTAAGAAAAGAACTCAAAGCAAAGCTCGCTAGCTACCATTAA 1590 0.4428 MAPSLVATYSVDPKKTNFINQSYQTTHIFKSKLPDIPINNTIPLHTYSFQKLPQVYNRPCLITSDGKEYTYGDVHRASRSLAMGLFNLGIRKGDIIMILLPNSPEFVFSFWAASMLGAVSTLANPSYTSLEITKQLKATKAKIVITHAMHVHKLKQDQQEENTFTVITVDKPPEKCMSFSTVSRNEGKLPEVDINPDDMVTLPFSSGTTGLSKGVILTHRSLXTNVAQQVEGENPNLQLKEEDVVLCVXPLLHIYALHCVMLCSMRVGCKVLLMEKFEMRAMLEVVEKQRVSVVMAVPPLVVALSKNPAVEEYELSSIRMALGMTESGPVISMSLSFAKYPMTTKLGSCGTVIRNAEMKIIDPLTGSSLFYNTPGEICIRGQQIMKGYLNNEKATAEAIDEEGWLHTGDIGYVDDDDELFVVDRLKELIKFKAFQVAPVELEVLLMTHPSIQDAAVVPQQDDVAGEVPVAFVVRSSNDPITEDAVKDFIAKQVVFYKRLHRVIFIDAIPKSSMGKILRKELKAKLASYH* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1211 529 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 27 524 - -
Amo13g1211 529 CDD 4CL 33 521 - -
Amo13g1211 529 PANTHER 4-COUMARATE--COA LIGASE 3 27 524 - -
Amo13g1211 529 SUPERFAMILY Acetyl-CoA synthetase-like 41 527 - -
Amo13g1211 529 Gene3D - 19 425 IPR042099 -
Amo13g1211 529 Gene3D - 426 527 IPR045851 -
Amo13g1211 529 ProSitePatterns Putative AMP-binding domain signature. 202 213 IPR020845 -
Amo13g1211 529 Pfam AMP-binding enzyme 57 322 IPR000873 -
Amo13g1211 529 Pfam AMP-binding enzyme 323 431 IPR000873 -
Amo13g1211 529 Pfam AMP-binding enzyme C-terminal domain 440 515 IPR025110 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1211 Amo-Chr13 15802179 15807838 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1211 1 493 Monolignol Biosynthesis Gene Families AT1G51680 51.796 0.0 519
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1211 K01904 - gmx:100790396 665.996