Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1203 ATGGCTTCGGCGAACGTGAACGGTGTGGCGCCGTTTCTGAGCAAGACGTACGACATGGTGGATGACTCGTCCACTGACTCGGTTGTTTCGTGGAGCGATAACAGCAACAGCTTCGTCGTCTGGAACGTTCCCGAATTCGCAAGCCGAATCTTGCCCAAATACTTCAAGCACAACAATTTCTCCAGCTTCGTCAGGCAGCTTAACACATACGGCTTTAGAAAAGTTGACCCTGACCGCTGGGAATTTGCAAATGAAGGSTTTTTAAAGGGACAAAAGCARCTYTTAAAGAGTATTAGTAGGCGGAAAACTTCTCATGTAAATGGYAGTACTCAGCAACCATCTCAGGTGCAGAACACACCTGTTGGTGGGGCTTGTGTTGAAGTTGGGAAGTTTGGGATTGAGGAAGAGATTGAAAGACTGAAAAGGGATAAGAATGTTCTTATGCAGGAACTTGTTAGGTTAAGACAGCAGCAGCAAACAACTGATAACCAGTTGCAAACTGTTGGGCAACGAGTTCAGGTAATGGAGCAGCGACAACAACAGATGATGTCRTTCCTGGCAAAAGCCATGCATAGTCCTGGCTTCTTGGCTCAATTTGTACAACAGAATGAAAGTAATAGACACATCACTGGAGKAAATAAAAAGAGGAGGCTCCACAGGCAGGATGAAGATAGTTTAGCCAACAAGCATCTCCATAATTCTCTTGATGGTCGTGTTGTCAAGTATCAGCCTTCTATAAATGAGGCAGCAAAATCATTGTTATGCCAGATTTTGCAAATGAACAACTCTACGAGGATGGACTCATCAATTAAGAGCCCGGATGCATTCCTTATTGAYGATGTTCCTACSGCCATTCCTTTAGATAGCAGTAGTTCATCCACTCGAGTATCTGGTGTTACCCTTTCCGAGGTTCCACATCCACAAACTTCTGGACAGTCATATGTGCCTATAGAACCACAATTTCCCGTCAGTCGAATGACCAGTAGCAGATCTGAGGTTCAATCTTCACCAGCAGTGTTTCCTGACTGTGTCAAAGCAGCTGAATTTCCAGAATTAAATGCTCAGAAATGCCAAGACAGTGTTTTAGATTTTGGTAAAGTCCAAGGGATTGGAACTGAAAGCAGCTTCATGAATCCTGATCTCAGTTTTGTGGGGTCTGACACTGCMAATATGGAGGATCTAGAAATGATCTCRACTGTYTTGGATGGAACAGAGTCTATTGAAGCTAATGCTTTTTCACCTGATGCAGATGGAGTTTCTAAGCTTCCTGGAATTGGTGATGAATTCTGGGAACTGTTTTTAAGGCCAAGTCCTCTCACTGGAGATACAGATGAAGTGAAGTGTAACTCTTTGGGATGTGATTTTACTGGTGACCAGGAATTGTCATCAGAAAAGGAGATTCAACAGGAAAATGCTGCTGATAAAAAACAGCATATGGACCATCTTACCCAACAGATGGGTCTTCTTGCTTCAAAGTCTTAA 1482 0.4318 MASANVNGVAPFLSKTYDMVDDSSTDSVVSWSDNSNSFVVWNVPEFASRILPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLKGQKQLLKSISRRKTSHVNGSTQQPSQVQNTPVGGACVEVGKFGIEEEIERLKRDKNVLMQELVRLRQQQQTTDNQLQTVGQRVQVMEQRQQQMMSFLAKAMHSPGFLAQFVQQNESNRHITGXNKKRRLHRQDEDSLANKHLHNSLDGRVVKYQPSINEAAKSLLCQILQMNNSTRMDSSIKSPDAFLIDDVPTAIPLDSSSSSTRVSGVTLSEVPHPQTSGQSYVPIEPQFPVSRMTSSRSEVQSSPAVFPDCVKAAEFPELNAQKCQDSVLDFGKVQGIGTESSFMNPDLSFVGSDTANMEDLEMISTVLDGTESIEANAFSPDADGVSKLPGIGDEFWELFLRPSPLTGDTDEVKCNSLGCDFTGDQELSSEKEIQQENAADKKQHMDHLTQQMGLLASKS* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1203 493 MobiDBLite consensus disorder prediction 459 478 - -
Amo13g1203 493 Pfam HSF-type DNA-binding 12 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo13g1203 493 SUPERFAMILY "Winged helix" DNA-binding domain 8 101 IPR036390 -
Amo13g1203 493 PRINTS Heat shock factor (HSF) domain signature 50 62 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo13g1203 493 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo13g1203 493 PRINTS Heat shock factor (HSF) domain signature 12 35 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo13g1203 493 Coils Coil 130 157 - -
Amo13g1203 493 Gene3D - 4 103 IPR036388 -
Amo13g1203 493 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 2 465 IPR027725 -
Amo13g1203 493 ProSitePatterns HSF-type DNA-binding domain signature. 51 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo13g1203 493 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-1E-LIKE 2 465 - -
Amo13g1203 493 SMART hsfneu3 8 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1203 Amo-Chr13 15699835 15703771 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1203 6 493 HSF AT5G16820 51.703 2.49e-150 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Amo13g1203 HSF_DNA-bind 2e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1203 K09419 - gmx:100793665 554.673