Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1193 ATGGCTTCGGCGAACGTGAACGGTGTGGCGCCGTTTCTGAGCAAGACGTACGACATGGTGGATGACTCGTCCACTGACTCGGTTGTTTCGTGGAGCGATAACAGCAACAGCTTCGTCGTCTGGAACGTTCCCGAATTCGCAAGCCGAATCTTGCCCAAATACTTCAAGCACAACAATTTCTCCAGCTTCGTCAGGCAGCTTAACACATACGGCTTTAGAAAAGTTGACCCTGACCGCTGGGAATTTGCAAATGAAGGATTTTTAAAGGGACAAAAGCAACTTTTAAAGAGTATTAGTAGGCGGAAAACTTCTCATGTAAATGGCAGTACTCAGCAACCATCTCAGGTGCAGAACACACCTGTTGGTGGGGCTTGTGTTGAAGTTGGGAAGTTTGGGATTGAGGAAGAGATTGAAAGACTGAAAAGGGATAAGAATGTTCTTATGCAGGAACTTGTTAGGTTAAGACAGCAGCAGCAAACAACTGATAACCAGTTGCAAACTGTTGGGCAACGAGTTCAGGTAATGGAGCAGCGACAACAACAGATGATGTCATTCCTGGCAAAAGCCATGCATAGTCCTGGCTTCTTGGCTCAATTTGTACAACAGAATGAAAGTAATAGACACATCACTGGAGTAAATAAAAAGAGGAGGCTCCACAGGCAGGATGAAGATAGTTTAGCCAACAAGCATCTCCATAATTCTCTTGATGGTCGTGTTGTCAAGTATCAGCCTTCTATAAATGAGGCAGCAAAATCATTGTTATGCCAGATTTTGCAAATGAACAACTCTACGAGGATGGACTCATCAATTAAGAGCCCGGATGCATTCCTTATTGACGATGTTCCTACTGCCATTCCTTTAGATAGCAGTAGTTCATCCACTCGAGTATCTGGTGTTACCCTTTCCGAGGTTCCACATCCACAAACTTCTGGACAGTCATATGTGCCTATAGAACCACAATTTCCCGTCAGTCGAATGACCAGTAGCAGATCTGAGGTTCAATCTTCACCAGCAGTGTTTCCTGACTGTGTCAAAGCAGCTGAATTTCCAGAATTAAATGCTCAGAAATGCCAAGACAGTGTTTTAGATTTTGGTAAAGTCCAAGGGATTGGAACTGAAAGCAGCTTCATGAATCCTGATCTCAGTTTTGTGGGGTCTGACACTGCCAATATGGAGGATCTAGAAATGATCTCGACTGTTTTGGATGGAACAGAGTCTATTGAAGCTAATGCTTTTTCACCTGATGCAGATGGAGTTTCTAAGCTTCCTGGAATTGGTGATGAATTCTGGGAACTGTTTTTAAGGCCAAGTCCTCTCACTGGAGATACAGATGAAGTGAAGTGTAACTCTTTGGGATGTGATTTTACTGGTGACCAGGAATTGTCATCAGAAAAGGAGATTCAACAGGAAAATGCTGCTGATAAAAAACAGCATATGGACCATCTTACCCAACAGATGGGTCTTCTTGCTTCAAAGTCTTAA 1482 0.4345 MASANVNGVAPFLSKTYDMVDDSSTDSVVSWSDNSNSFVVWNVPEFASRILPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLKGQKQLLKSISRRKTSHVNGSTQQPSQVQNTPVGGACVEVGKFGIEEEIERLKRDKNVLMQELVRLRQQQQTTDNQLQTVGQRVQVMEQRQQQMMSFLAKAMHSPGFLAQFVQQNESNRHITGVNKKRRLHRQDEDSLANKHLHNSLDGRVVKYQPSINEAAKSLLCQILQMNNSTRMDSSIKSPDAFLIDDVPTAIPLDSSSSSTRVSGVTLSEVPHPQTSGQSYVPIEPQFPVSRMTSSRSEVQSSPAVFPDCVKAAEFPELNAQKCQDSVLDFGKVQGIGTESSFMNPDLSFVGSDTANMEDLEMISTVLDGTESIEANAFSPDADGVSKLPGIGDEFWELFLRPSPLTGDTDEVKCNSLGCDFTGDQELSSEKEIQQENAADKKQHMDHLTQQMGLLASKS* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1193 493 MobiDBLite consensus disorder prediction 459 478 - -
Amo13g1193 493 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-1E-LIKE 2 465 - -
Amo13g1193 493 Pfam HSF-type DNA-binding 12 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo13g1193 493 SUPERFAMILY "Winged helix" DNA-binding domain 8 101 IPR036390 -
Amo13g1193 493 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 2 465 IPR027725 -
Amo13g1193 493 PRINTS Heat shock factor (HSF) domain signature 12 35 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo13g1193 493 PRINTS Heat shock factor (HSF) domain signature 50 62 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo13g1193 493 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo13g1193 493 Coils Coil 130 157 - -
Amo13g1193 493 ProSitePatterns HSF-type DNA-binding domain signature. 51 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo13g1193 493 Gene3D - 4 103 IPR036388 -
Amo13g1193 493 SMART hsfneu3 8 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1193 Amo-Chr13 15567402 15569721 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1193 6 493 HSF AT5G16820 51.703 4.89e-150 435
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Amo13g1193 HSF_DNA-bind 2e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1193 K09419 - gmx:100793665 553.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g1193 13 15567402 15569721 Amo13g1193 13 15567402 15569721 ECH