Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1189 ATGGGGAGATCACGAAGTGGTTATGATGAGAGTGGGTTGAAGAAAGGTCCATGGACAGCGGAAGAGGATAGAATATTGGTGGATTACATAAACAAAAACGGCCATGGAAGTAATTGGCGAGCGCTTCCTAAGATTGCAGGTCTAAACAGATGTGGAAAGAGTTGCAGGCTGAGGTGGACTAACTACCTCAGGCCTGATATCAAGAGAGGAAAATTCTCTCAAGAAGAAGAGAAACTCATCATCAACTTACATCAACTTCTTGGCAATAAGTGGTCAGCAATAGCAAGTCATCTACCAGGAAGAACTGACAATGAAATCAAGAATTTCTGGAACACTAATCTTAGAAAGAAGCTTCTAAGAATGGGGTTAGATCCAGTGACTCATCGTCCAAGATTAGATCATAATCATAATAATCAACTTCAACTTCTTTCCAATCTTCAACACTTGCTTCTTGCTGCAAACATTCTCAACAATAACAACAATAATAATCCTCTATTAAGGTTGAATGAATCTATGCTCCAAAACCTTATTTGCAGTAATGATTCTTTCCCTTGTCAAAATCAGCCCAATTTCCAAAACTTTGAAGCTCCTCCTCATGATGATAATGTTAATAATAATAATGAGAAAGTTGTTGTTGATGGCACAAATTCTTCTTCTCCTACAACACCATTGAATTGTTATTCACTTCCAAATCTGGTTTCAGCCTCATCACCTCATCATGCATGTTCCAACAAA 735 0.381 MGRSRSGYDESGLKKGPWTAEEDRILVDYINKNGHGSNWRALPKIAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEKLIINLHQLLGNKWSAIASHLPGRTDNEIKNFWNTNLRKKLLRMGLDPVTHRPRLDHNHNNQLQLLSNLQHLLLAANILNNNNNNNPLLRLNESMLQNLICSNDSFPCQNQPNFQNFEAPPHDDNVNNNNEKVVVDGTNSSSPTTPLNCYSLPNLVSASSPHHACSNK 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1189 245 CDD SANT 17 63 IPR001005 -
Amo13g1189 245 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Amo13g1189 245 Pfam Myb-like DNA-binding domain 15 63 IPR001005 -
Amo13g1189 245 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 9 173 - -
Amo13g1189 245 SUPERFAMILY Homeodomain-like 12 110 IPR009057 -
Amo13g1189 245 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Amo13g1189 245 ProSiteProfiles Myb-like domain profile. 10 63 IPR001005 -
Amo13g1189 245 CDD SANT 71 114 IPR001005 -
Amo13g1189 245 Gene3D - 71 118 - -
Amo13g1189 245 SMART sant 14 65 IPR001005 -
Amo13g1189 245 SMART sant 68 116 IPR001005 -
Amo13g1189 245 Gene3D - 8 68 - -
Amo13g1189 245 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Amo13g1189 245 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 63 IPR017930 -
Amo13g1189 245 PANTHER MYB TRANSCRIPTION FACTOR 9 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1189 Amo-Chr13 15496852 15498591 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1189 1 172 MYB Transcription Factor Family AT5G16770 68.605 7.15e-76 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo13g1189 Myb_DNA-binding 2.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1189 K09422 - gmx:100781707 249.21