Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1180 ATGCAAAAGAAGTTTCGTGTGTTGACCCCATTTCTGTCGCAAATGGCCGCCGCTGACAACACCACCAAGCCAAGGGATTATTACAAAGTGTTGGAGGTTGATTATGATGCAACTGATGAAAACATCAAATTAAATTACCGAAGACTTGCATTGAAATGGCATCCTGACAAGCATAAAGGTGACAGTACAGTTACTGCGAAATTTCAAGAGATAAATGAAGCTTACAATGTGTTGAGTGATCCTGTCAAGCGTTGTGACTATGATTTAACCGGAGCCTGTGAGATCGAAAAGTATAGCTTGCAGGAATACCTTGCCAGATTTAAAGGCATGATTCTTACCTGCAATGGACTTGGCATCAACCATACAGACAGATGGTCGCCACATTTGATTGAAAGTATTGATTCCTTAGATGAGTAA 417 0.4077 MQKKFRVLTPFLSQMAAADNTTKPRDYYKVLEVDYDATDENIKLNYRRLALKWHPDKHKGDSTVTAKFQEINEAYNVLSDPVKRCDYDLTGACEIEKYSLQEYLARFKGMILTCNGLGINHTDRWSPHLIESIDSLDE* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1180 138 ProSiteProfiles dnaJ domain profile. 26 91 IPR001623 -
Amo13g1180 138 CDD DnaJ 26 80 IPR001623 -
Amo13g1180 138 PRINTS DnaJ domain signature 28 46 IPR001623 -
Amo13g1180 138 PRINTS DnaJ domain signature 46 61 IPR001623 -
Amo13g1180 138 PRINTS DnaJ domain signature 63 83 IPR001623 -
Amo13g1180 138 PRINTS DnaJ domain signature 83 102 IPR001623 -
Amo13g1180 138 ProSitePatterns Nt-dnaJ domain signature. 68 87 IPR018253 -
Amo13g1180 138 Pfam DnaJ domain 26 88 IPR001623 -
Amo13g1180 138 Gene3D DnaJ domain 9 105 IPR036869 -
Amo13g1180 138 SMART dnaj_3 25 83 IPR001623 -
Amo13g1180 138 SUPERFAMILY Chaperone J-domain 22 111 IPR036869 -
Amo13g1180 138 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 18 130 - -
Amo13g1180 138 PANTHER DNAJ PROTEIN-LIKE 18 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1180 Amo-Chr13 15346081 15349430 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1180 17 88 C2H2 Transcription Factor Family AT1G74250 40.260 3.07e-11 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1180 - - lja:Lj3g3v3639180.1 223.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g1180 13 15346081 15349430 Amo13g1180 13 15346081 15349430 ECH