Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1179 ATGCTTTGTTCCAGCATCTGCCACACTGATATCAAAAGAATTAGAGGATCCCCAGTAGTGAAGTATCCTCTTGCTGTTGGACATGAAGGAGTCGGTGTTGTAGAGAGTGTTGGAGAGGAAGTAAAAAATCTGAAAGAAGGGGATATGGTGATTCCAACCTTCATAGGAGAGTGCAAACAATGTGAGATTTGCATTTCAGGAAAATCCAATTTGTGCATGACAAACCCTTTAATGCTCAATGGATTGATGAGAGACAACACTTCAAGGTTGTCCTGCAAAGGCAAAAGGCTTCACCATATTTTCAGTTGTGCCACTTGGTCAGAGTACATGGTTGTTGATGCCAACTATGCTCTTAAAGTTGATCCAAGCATTGACCTAGCACATGCCAGTTTCATCTCATGTGGCTTTTCAACTGGTTATGGTGCTGCTTGGAAGGAAGCTAAGGTTGAAAGTGGATCAAGTGTTGCTGTTTTTGGTCTTGGCGCTGTTGGATTGGGGGTATGCATCAAATACACTTTTGCATTACATGTCCACTTTATATCCTAA 546 0.4194 MLCSSICHTDIKRIRGSPVVKYPLAVGHEGVGVVESVGEEVKNLKEGDMVIPTFIGECKQCEICISGKSNLCMTNPLMLNGLMRDNTSRLSCKGKRLHHIFSCATWSEYMVVDANYALKVDPSIDLAHASFISCGFSTGYGAAWKEAKVESGSSVAVFGLGAVGLGVCIKYTFALHVHFIS* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1179 181 PANTHER ALCOHOL DEHYDROGENASE-RELATED 1 167 - -
Amo13g1179 181 Gene3D - 139 168 - -
Amo13g1179 181 Pfam Alcohol dehydrogenase GroES-like domain 3 120 IPR013154 -
Amo13g1179 181 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 27 41 IPR002328 GO:0008270|GO:0016491
Amo13g1179 181 SUPERFAMILY GroES-like 2 158 IPR011032 -
Amo13g1179 181 Gene3D - 2 138 - -
Amo13g1179 181 PANTHER ALCOHOL DEHYDROGENASE 1 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1179 Amo-Chr13 15325483 15327605 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1179 6 140 Monolignol Biosynthesis Gene Families AT4G37980 29.927 4.47e-12 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1179 K00121 - gmx:100798341 252.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g1179 13 15325483 15327605 Amo13g1179 13 15325483 15327605 ECH