Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1178 ATGACAAACACTTCTCAAATTATTACATGCAAAGCTGTAGTATGTTGGAAGGTTGGAGAGGGTGTGAAGATTGAAGAGATTCAAGTTGATCCACCAAAATCAACTGAAGTTCGACTTAAGATGCTTTGTTCTAGCATTTGCCACACTGATATCACAAGCATTCAAGGAACTCCTCTATTTAAGTTTTATCCTCTAGCACTTGGACATGAAGGAATTGGGGTTGTAGAATCGGTTGGAGATGAAGTGAAGAGTGTGAAAGAAGGCGATATGGTGATTCCAGTATTTGTAGGAGAGTGCAAAGAATGTGAGAATTGCATTTCAGAAAAATCAAATTTGTGCATGACATATCCTGTGAGGCTGACTGGCTTGATGCTGGATAACACTTCAAGAATGTCATGCAGAGGACAGAGGCTATACCACACTTTGAGTTGTGCCACGTGGTCCGAGTACACGGTTATCGATGTTAACTACCTTGTCAAGGTTGATCCAAGCATTAATCCAGCTCATGGCAGCTTCATCTCATGTGGCTTCTCCTCTGGCTATGGAGCTGCATGGAAAGAAGCCAGGGTTGAAAGTGGATCAAGTGTAGCTGTCTTTGGTCTTGGTGCTGTTGGATTAGGGGTTATAAGTGCAGCAAAAATGTTGGGGGCAACTAAGATAATAGGGATTGACAAAAATGATATGAAGAGAGAAAAAGGTGAAGCTTTTGGAATGAGTCATTTTATAAATCCAAGTAATTCTGATAAATGTTCTTCAGCATTGGTGAAGGAACTAAGTGGTGGAATGGGTGTGGATTATTCCTTTGAGTGCACTGGAGTTGGCCCTTTGCTTACTGAATCATTAGAAGCTACAAAAATGGGAACAGGTAAAGCAATAACACTTGGTTCAGGAACTGAACCTTATGTACCATTTGATCCCTTTTCTATTCTTTTTGGAAGAATTTTGAAAGGATCAATATTTGGGGGGTTAAAATCCACGTCAGACCTACCCATCATAGCTAACAAATGTATTAAACAGGAGTTTCCTCTTCAAGAACTGTTCACCCATGAAGTCAAATTAACAGATATAGAACAAGCATTTGAGTTATTGAAACAACCCAATTGTGTAAAAGTTGTCATCCAGATATAA 1128 0.3963 MTNTSQIITCKAVVCWKVGEGVKIEEIQVDPPKSTEVRLKMLCSSICHTDITSIQGTPLFKFYPLALGHEGIGVVESVGDEVKSVKEGDMVIPVFVGECKECENCISEKSNLCMTYPVRLTGLMLDNTSRMSCRGQRLYHTLSCATWSEYTVIDVNYLVKVDPSINPAHGSFISCGFSSGYGAAWKEARVESGSSVAVFGLGAVGLGVISAAKMLGATKIIGIDKNDMKREKGEAFGMSHFINPSNSDKCSSALVKELSGGMGVDYSFECTGVGPLLTESLEATKMGTGKAITLGSGTEPYVPFDPFSILFGRILKGSIFGGLKSTSDLPIIANKCIKQEFPLQELFTHEVKLTDIEQAFELLKQPNCVKVVIQI* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1178 375 Gene3D - 14 370 - -
Amo13g1178 375 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Amo13g1178 375 CDD liver_alcohol_DH_like 8 373 - -
Amo13g1178 375 SMART PKS_ER_names_mod 19 373 IPR020843 GO:0016491
Amo13g1178 375 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 167 335 IPR036291 -
Amo13g1178 375 Gene3D - 180 318 - -
Amo13g1178 375 PANTHER ALCOHOL DEHYDROGENASE-RELATED 5 374 - -
Amo13g1178 375 Pfam Zinc-binding dehydrogenase 203 323 IPR013149 -
Amo13g1178 375 SUPERFAMILY GroES-like 325 373 IPR011032 -
Amo13g1178 375 Pfam Alcohol dehydrogenase GroES-like domain 35 161 IPR013154 -
Amo13g1178 375 PANTHER ALCOHOL DEHYDROGENASE 5 374 - -
Amo13g1178 375 SUPERFAMILY GroES-like 4 189 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1178 Amo-Chr13 15311758 15315793 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1178 35 367 Monolignol Biosynthesis Gene Families AT2G21730 26.393 9.69e-18 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1178 K00121 - gmx:100798341 576.63