Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1173 ATGATCCAGAACGCTGATATGAAACTCGAGTCAGGGACTTGTAACGTTTGCTCAGCTCCTTGTTCGTCCTGCATTCATCTTAGTCGAGCTCTCACTCGACCAAAGGCCAAAGAGTTCTCTGATGAAAATTGTCACTTGGGGGAGGCCAATCTGTTTTCTACGGATGAGGGTGATCAATCTTCTCGTAGGAGCAGAACTTGTGAAAGATTGAATCATGCTAGCAGTGAAACCGGTAACATGCTTGGTGTTAATTCCTGTCATGAATCTATGTCTGAAAATGCTGAAAGCACACGAGCTTTATCAGAGAAGTACCGGGATGCCAAATTTTTAGAAGGTCTTGATGACAATGCTTCTTGTATCAGTAGAACCAGTGATGCTGATTTAATACCTGTTATTAATGGCAATACTGCTGTGCTTTCGACAAGAGTATATCCAAAGTCAGAATCAGATTCAGATAGTGATGTTGGTAATGTGAAAGACAAAAATCATAAAGTTCCAGTCCGTGATGGACTGCATGAGAAGCAAGGGGAGCAGGTTAAATCACCAGTCAAGCCTGAAGCTCACTCTGAAGATGAGAGTGATGACTCAGATGTTGAGCATGATGTAAAAGTTTGTGACATCTGTGGGGATGCTGGTCGGGAGGAGCTACTTGCAGTATGTAGCAGGTGCAGTGATGGTGCAGAGCACACCTATTGCATGCGAGAAATGCTTGAAAAGGTTCCAGAAGGAGACTGGTTATGTGAAGAATGCAAATATGCTCAGGAGACTGAAAATCAAAAGCTGGGTAAAATTAATTCAACTGCACATATCTCTGGAAAAAGGCCTCTTGAAAGTGAAGAATTGGCTAAGGCAGCAAAAAAGCAAGCTCTTGAGTCAAACATTGGGTCACCAAAGGGTTCAAGCCCCAAGAGAGTATTTCCACTGTCACGAGAGTCTTCATTCAAGAACCTTGATAAGGGAAAGTTGAATTCTGGTTACCACAGCTCCATTTGTAATCACCCTCATGGCAGTGACAGAGAACTTGCTCGCTCTCTTTCAGCTGGTCCTCGAAGTCAAACAACAAAGAGTACATTGTTGAAGTCAAATTCATTCAATACGAATTCCAACCCAAGAGTCAAACTTGTTGATGAAGTCCCACAAAAGAAGAAAGGGGGCAGCGAACATGCTTCTAAGAATAGTGAGACACCAAGGCAAATGATTAGCAAATCTACATCATTCAAATCATCGAATTTGAGCCGTTCAAGTGCCACTGAATCAAAAGTTAAAATGCTTACTTCTAAGTCTAGATCCACACAGGACCTGAAAGGATCAAGACTAACAAAAGAATCTGACAGGAAATTTCTCTCTAGGGTTGATCAGCCTGTGGTTTGTTCAACCATTTCCAAACCTATAGGTGACCATAAGCTTTCCCCTCATGGTGAGACCAGTAAACCTTCTGCAGTTAACAATCGAGAGTGTAAGGGCAACCCAGATGTGAGATCAAATTCATTATCTAAGAATAATATAAACCGCAAGAGTTCGGCACCTTTATTTAGTGCAGAAAGAATAGCAACCAGTGGTGAAGAAACTCAATTGGATGGGCCGCCTCAATCAAGAGAATTTTCAAATCAAATTGATAATACCAAAGATAGTTCTAGTGATCATGTGAGCTCTGGTCTTACTAATGCTTCTGGAAGCTCAGTCTTTCACAAAAGTAAGGATTTTGGCCATGCAACAGAATGTCGCGGGGTTGCTAATAGAGAAGAATTCAGCCTCGAAGGATCAACCACTGCCCCAAACAGTTCAAAAGACAAGATACATAAAGATAATAGACTGAAAGCTGCAATCCAGGCAGCTTTGCTTAGAAGGCCTGAAATATGCAAGAAGAAAGAAGTACCTGATCGAACTGATGAATTTTCTACATCAGGCACAGACTTGAATTCAGAAGTCAGTTCTCAGGATCAGTCGATTGTTATCAACACACAAAAGAATATTCTTTCTACTGAAGAAACAAAAGCGAGGCAGGAGATCCTTCACAACCCAACATTTGAAACTCCATCTTCCAATGGTTCGAAGCCAGTTAGCTTTGGTCCAATACAGCCAAGAAAGTTAGAATCTGTTGGTCCTGATCCTGGAAATCCTGTAGTGAGAGATTTCCAGAATCAAGCTTTGGCTGTCTCAAGTGTTCTTTCACAGATAGCAGCCTTTCCAGAACATCAATTCATCTGGCAAGGTGTCTTTCAAGTGCACAGATATGGAAAGCTACCTAACTTGTATACTGGAATTCAAGCACATTTATCCACATGTGCATCCCCCAAGGTTCTTGAGGTAGTGAACAAGTTTCTACCTGAAGTTTCCCTCGATGAAGTTTCTCGCTTGAGCACTTGGCCTTCACAATTTCATCAAGGCAGGGCTAGGGAAGATAATATCGCTCTTTACTTTTTTGCCAAAGACATTGAAAGTTATAAGAGACACTACAAGGGTCTACTGGATCACATGATTAGAAATGATTTAGCACTTAAAGGAAGTTTTGATGGTGTTGAACTTCTCATATTCCCATCTAATCAGCTTCCTGAAAATTCTCAGCGTTGGAATATGCTGTTTTTCTTATGGGGTGTATTTAGAGGACATAGGATGAATAATTTTGACTCTGCAAGAAAGGTTTGTATTCCCAGTTTGAACGTGGTGCCAGTTGAGAAGGATTTTCCAACTTCTGTCATGAATTTGTCTGAAACCCACAGCTCACTGAAGCGGATGGATGAACAATCAATTGCTTGTGGTAGCACAGGCAGTGCAGTTCTCCCTTCCACTTCCATAGGTGAAGGCCCTAATGTTTTCCATGGGGATTTTGATATCAAAGAAACTAGTGACGAGGCATGTTTGGGTTCACAAGTAAACTTACATAGGCAAGATACTAGAATCAACACTGAATCTACATTGGAGATTCCTTCAAGCAGTGGTCAGTTGTGCCAAGAATTGCATTCCGCAGGTTCATCCCCGAAAGATGGACAGCAGAGAGTCCCCACACCTCCTGAAGCAATGAGAACACTTGTAAGTAACTGGATTGTGGAAACAAATAGTGACTATGATATTTCAGTCAAGCAAGAGAACTCTCTGTCTTCAGGGATTCCTTCTGCCGAGAAACAAGAGACAGATGCTGCAAGCAATACCTCTAAAAGTCAAATTTCAGAGAGAATTAACCATGATGAAGATCAACATAGGCCTAAAAGGAAACTGATAGAAGAAGATCTCAATATTAGCATAGAGGCAACGCTTCAAGAAGGCCCATCTGTAACAATCATAAACTGTCAGCAAACCAATGATAAAAGAGTTCAGCATATAGATGTTTCAAATGCAGTTTTGAAGGCTTCCACAGATAGTTATCAGAAATTGCCTTGGGATAAGGTCAATGGAAAATTGGAAGATGGAGAAAGTTCCAGCAAGAAGCTCAAGTCAGGTTTAACTGATATTTATGGAAGTTGTAGTTCAGGAGGTAGGGAATCTTCCAATGGCAGTTTTACGGGCCGTGCAAACCATCCTGGTACCTTCTCTTCAGTTGAGGACCTTGGAACCATGGAAAGAACCTTCTTTCCTGTTGATTCGCATAAGAAAAATGACTCACAATTGATGCTCAACGGCATGCCACTGGAGGGGTCTTGTGAGTATGAGGGTCAATTTCAAGTTGGGATTCCAAATCTAGAGCTTGCTTTGGGGGGCAAAATAAAACCACAGCCACTGCCAGTTCCAGCGCCGCCCCATAAGGGTATGTTCCCTTTTCTCGTCGGAGCTGTAGACAAGAAAAATAACCAGAAAAAACCACCTGAAGTAGTTGGGGATGAGCAAGAGGGCGACAACAGTGTTGCTGCATCTCTTTCGCTGTCTCTATCATTCCCATCATCAAATAAGGAACCTGTCAAACCTGCTCCAAAAGCTGAACATTCGACTGATGGGCATCATGTGAATACTCCGTTTCTCCTTTTTGGGAGATACACAGACAAATAA 3981 0.4192 MIQNADMKLESGTCNVCSAPCSSCIHLSRALTRPKAKEFSDENCHLGEANLFSTDEGDQSSRRSRTCERLNHASSETGNMLGVNSCHESMSENAESTRALSEKYRDAKFLEGLDDNASCISRTSDADLIPVINGNTAVLSTRVYPKSESDSDSDVGNVKDKNHKVPVRDGLHEKQGEQVKSPVKPEAHSEDESDDSDVEHDVKVCDICGDAGREELLAVCSRCSDGAEHTYCMREMLEKVPEGDWLCEECKYAQETENQKLGKINSTAHISGKRPLESEELAKAAKKQALESNIGSPKGSSPKRVFPLSRESSFKNLDKGKLNSGYHSSICNHPHGSDRELARSLSAGPRSQTTKSTLLKSNSFNTNSNPRVKLVDEVPQKKKGGSEHASKNSETPRQMISKSTSFKSSNLSRSSATESKVKMLTSKSRSTQDLKGSRLTKESDRKFLSRVDQPVVCSTISKPIGDHKLSPHGETSKPSAVNNRECKGNPDVRSNSLSKNNINRKSSAPLFSAERIATSGEETQLDGPPQSREFSNQIDNTKDSSSDHVSSGLTNASGSSVFHKSKDFGHATECRGVANREEFSLEGSTTAPNSSKDKIHKDNRLKAAIQAALLRRPEICKKKEVPDRTDEFSTSGTDLNSEVSSQDQSIVINTQKNILSTEETKARQEILHNPTFETPSSNGSKPVSFGPIQPRKLESVGPDPGNPVVRDFQNQALAVSSVLSQIAAFPEHQFIWQGVFQVHRYGKLPNLYTGIQAHLSTCASPKVLEVVNKFLPEVSLDEVSRLSTWPSQFHQGRAREDNIALYFFAKDIESYKRHYKGLLDHMIRNDLALKGSFDGVELLIFPSNQLPENSQRWNMLFFLWGVFRGHRMNNFDSARKVCIPSLNVVPVEKDFPTSVMNLSETHSSLKRMDEQSIACGSTGSAVLPSTSIGEGPNVFHGDFDIKETSDEACLGSQVNLHRQDTRINTESTLEIPSSSGQLCQELHSAGSSPKDGQQRVPTPPEAMRTLVSNWIVETNSDYDISVKQENSLSSGIPSAEKQETDAASNTSKSQISERINHDEDQHRPKRKLIEEDLNISIEATLQEGPSVTIINCQQTNDKRVQHIDVSNAVLKASTDSYQKLPWDKVNGKLEDGESSSKKLKSGLTDIYGSCSSGGRESSNGSFTGRANHPGTFSSVEDLGTMERTFFPVDSHKKNDSQLMLNGMPLEGSCEYEGQFQVGIPNLELALGGKIKPQPLPVPAPPHKGMFPFLVGAVDKKNNQKKPPEVVGDEQEGDNSVAASLSLSLSFPSSNKEPVKPAPKAEHSTDGHHVNTPFLLFGRYTDK* 1327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1173 1326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 266 IPR013083 -
Amo13g1173 1326 SUPERFAMILY FYVE/PHD zinc finger 190 257 IPR011011 -
Amo13g1173 1326 MobiDBLite consensus disorder prediction 1278 1294 - -
Amo13g1173 1326 MobiDBLite consensus disorder prediction 517 562 - -
Amo13g1173 1326 MobiDBLite consensus disorder prediction 1262 1315 - -
Amo13g1173 1326 MobiDBLite consensus disorder prediction 1029 1055 - -
Amo13g1173 1326 MobiDBLite consensus disorder prediction 625 647 - -
Amo13g1173 1326 MobiDBLite consensus disorder prediction 143 198 - -
Amo13g1173 1326 MobiDBLite consensus disorder prediction 375 390 - -
Amo13g1173 1326 MobiDBLite consensus disorder prediction 391 433 - -
Amo13g1173 1326 PANTHER - 1078 1317 - -
Amo13g1173 1326 PANTHER - 7 129 - -
Amo13g1173 1326 PANTHER - 135 1076 - -
Amo13g1173 1326 SMART PHD_3 204 251 IPR001965 -
Amo13g1173 1326 MobiDBLite consensus disorder prediction 285 312 - -
Amo13g1173 1326 MobiDBLite consensus disorder prediction 434 449 - -
Amo13g1173 1326 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1078 1317 - -
Amo13g1173 1326 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 7 129 - -
Amo13g1173 1326 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 135 1076 - -
Amo13g1173 1326 MobiDBLite consensus disorder prediction 984 998 - -
Amo13g1173 1326 MobiDBLite consensus disorder prediction 325 564 - -
Amo13g1173 1326 MobiDBLite consensus disorder prediction 984 1003 - -
Amo13g1173 1326 MobiDBLite consensus disorder prediction 147 191 - -
Amo13g1173 1326 MobiDBLite consensus disorder prediction 475 508 - -
Amo13g1173 1326 MobiDBLite consensus disorder prediction 346 373 - -
Amo13g1173 1326 MobiDBLite consensus disorder prediction 632 647 - -
Amo13g1173 1326 MobiDBLite consensus disorder prediction 1029 1068 - -
Amo13g1173 1326 ProSiteProfiles Zinc finger PHD-type profile. 202 253 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1173 Amo-Chr13 15253393 15262123 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1173 201 261 C2H2 Transcription Factor Family AT3G01460 32.787 6.02e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1173 - - ahf:112789342 2506.86