Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1111 ATGTATGGAGAGGAGGGAGGTGGTGAGCACTGTGAGTGTATGGAGAGGACGGAGGTAGTCAGCGCTGTGAATGTGCCAATGTATATTGGAGCACAGATATTGGCATCAGTGTGTGCCGCATTTGCACTGAAGGAAGTGTATCATCCATTCATGGGGGTGGAGTTACGGTTCCTTCAGGAGGATATAACCAAGTTTTGCTTTAGAATTCATCATCAGCTTCAATCTCATGTTGGACAGTTCGCGGGAATGGCGTTGGGAGCTACTGTAATGTTCAACATCCTCATAGTTGGGCCAGTATCAGGGGGATCAATGAATTCAGTAAGAACATTAGGTCCAGCAATTGCAGCAAACAATTACAAAGCAATTTGGATTGTAGTATTTACATTTACATTACACCCTGTTGAGAACAAAAACCAACTCAGGGTTGTTTCAGCAGATATGGAAGCTAACTATCATCGAGTTAGTTGCTACCGCCTTTCTCATGTTGGAGAGTTAGCGAAAATCACTGTAGGAGCCATTGTCATGCTCAACATCCTTATAGTCAGCATCAGAGGATCAATGAACCCAGTAAAAACATTAGGTCCAGCAATTACATTAACTATCATCGAGTTAGTTGCTACCGCATTTCTCATGTTTGGCCTAACATGCTCGACCATTATTTTAGAGTCAAACAAACTTACTCTTATTTTGTTAGCCCCAGTTGCAGTGATTTTGAAGAATTGA 723 0.4219 MYGEEGGGEHCECMERTEVVSAVNVPMYIGAQILASVCAAFALKEVYHPFMGVELRFLQEDITKFCFRIHHQLQSHVGQFAGMALGATVMFNILIVGPVSGGSMNSVRTLGPAIAANNYKAIWIVVFTFTLHPVENKNQLRVVSADMEANYHRVSCYRLSHVGELAKITVGAIVMLNILIVSIRGSMNPVKTLGPAITLTIIELVATAFLMFGLTCSTIILESNKLTLILLAPVAVILKN* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1111 240 Pfam Major intrinsic protein 75 127 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo13g1111 240 Gene3D Glycerol uptake facilitator protein. 16 131 IPR023271 -
Amo13g1111 240 PANTHER AQUAPORIN NIP2-1 24 124 IPR034294 -
Amo13g1111 240 PANTHER AQUAPORIN NIP6-1 145 202 - -
Amo13g1111 240 PANTHER AQUAPORIN NIP6-1 24 124 - -
Amo13g1111 240 SUPERFAMILY Aquaporin-like 20 126 IPR023271 -
Amo13g1111 240 PRINTS Major intrinsic protein family signature 24 43 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo13g1111 240 PRINTS Major intrinsic protein family signature 86 108 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo13g1111 240 PANTHER AQUAPORIN NIP2-1 145 202 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1111 Amo-Chr13 14062517 14067938 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1111 162 197 Major Intrinsic Protein MIP AT4G10380 71.053 4.09e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1111 K09874 - gmx:100815637 119.783