Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1107 ATGGATGGTACAGCTGCAAGAAAGTCTCAAAAGGCTGACCGAGAAAAAATAAGGAGGGATCGACTCAATGAACAATTTGTAGAACTCGGCAGCATTTTGGACCCTGATAGGCCTAAAAATGACAAAGCAACCATTCTTGGTGATACAATTCAATTGCTGAAGGATCTTACTTCTCAAGTTGGTAAACTCAAAGATGAATATGCTGCACTAAATGAAGAATCTCGTGAATTGGCTCAAGAGAAAAACGATCTCAGGGAAGAGAAGGCTTCTCTTAAAACAGATATTGAAAACTTGAATAATCAGTATCAGCAGCGACTGAGGAACATGTTTCCTTGGACTGCAATGGATCATTCAGTTATGATGGCTCCACCATCATACCCATACCCAATGCCAATGGCTGTCCCTCCGGGTTCAATTCCCTTGCAACCATACCCATTCTTTGCTAATCAAAATCCGTCTGTCATCCCTAACCCCTGTTCAACATTTGTTCCTTATTTAGCACCAAATACCCTTGTTGAACAACAATCTGCCCAGTATGTATCTCCACCGTCTCATCCAGGTACTCGGTCCCATTTGTCAAGTAAACATGACACCAGAAACAAACCACCCAGGGATAGGGAGAGCAAAGCAGAAAAAAGTGAGGCTTCAAATGATGTCACCACAAACCTTGAGTTGAAGACTCCTGGATCTTCTGCAGATCAGGATTTATCGTCAGGAAAAAGGAAATGCAGCAAGCCATTGAGGTCAGAAGGGAGTTCATTAGGTAGGTGTTCATCGTCACATAGTGTTCAGGACAGCTCATCAAGTAGTGTCGATGGTAGCAGAAAGGCTAACGAATGA 840 0.4286 MDGTAARKSQKADREKIRRDRLNEQFVELGSILDPDRPKNDKATILGDTIQLLKDLTSQVGKLKDEYAALNEESRELAQEKNDLREEKASLKTDIENLNNQYQQRLRNMFPWTAMDHSVMMAPPSYPYPMPMAVPPGSIPLQPYPFFANQNPSVIPNPCSTFVPYLAPNTLVEQQSAQYVSPPSHPGTRSHLSSKHDTRNKPPRDRESKAEKSEASNDVTTNLELKTPGSSADQDLSSGKRKCSKPLRSEGSSLGRCSSSHSVQDSSSSSVDGSRKANE* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1107 279 SMART finulus 12 62 IPR011598 GO:0046983
Amo13g1107 279 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 4 75 IPR036638 GO:0046983
Amo13g1107 279 MobiDBLite consensus disorder prediction 190 214 - -
Amo13g1107 279 MobiDBLite consensus disorder prediction 175 279 - -
Amo13g1107 279 MobiDBLite consensus disorder prediction 215 237 - -
Amo13g1107 279 Coils Coil 5 25 - -
Amo13g1107 279 Pfam Helix-loop-helix DNA-binding domain 7 56 IPR011598 GO:0046983
Amo13g1107 279 Coils Coil 53 108 - -
Amo13g1107 279 PANTHER TRANSCRIPTION FACTOR BHLH121 2 278 - -
Amo13g1107 279 MobiDBLite consensus disorder prediction 175 189 - -
Amo13g1107 279 MobiDBLite consensus disorder prediction 251 279 - -
Amo13g1107 279 PANTHER TRANSCRIPTION FACTOR BHLH121 2 278 IPR044579 GO:0003700|GO:0055072
Amo13g1107 279 CDD bHLH_AtILR3_like 11 85 - -
Amo13g1107 279 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 56 IPR011598 GO:0046983
Amo13g1107 279 Gene3D - 5 87 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1107 Amo-Chr13 14002475 14005526 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1107 4 235 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 65.560 1.65e-96 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo13g1107 HLH 2.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1107 - - cam:101491902 410.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g1107 13 14002475 14005526 Amo13g1107 13 14002475 14005526 ECH