Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1100 GGGAGAGGGGGTTTGTTTTGTATAAGTAAATATGTGCTTGTTTGTAGAATTCGTGAAAATACAAAAATGGCTAACCCTAAGGTTTACTTCGACATGTCCATCGGAGGACAACCAGCCGGAAGAGTCGTCTTCGAGCTCTTCGCCGACACGGTTCCCCGCACCGCCGAGAATTTCCGGGCCCTCTGCACCGGTGAGAAAGGCGTCGGTCGCGGCGGCAAGCCTCTCCACTACAAGGGATCATCCTTCCACCGTGTGATCCCTAACTTCATGTGTCAGGGAGGTGACTTCACCGCTGGAAACGGCACCGGAGGTGAGTCGATCTACGGCTCCAAGTTTGCCGATGAGAACTTTATCAAGAAGCACACCGGTCCTGGGATCCTTTCAATGGCGAATGCAGGACCTGGGACGAACGGATCTCAGTTCTTCATCTGCACCTCGAAGACGGAGTGGCTCGACGGAAAGCACGTGGTGTTCGGCCAAGTTGTTGAAGGAATGGACGTCGTTAAGGCGGTCGAGAAGGTTGGATCTAGCTCCGGCAAGACCTCCAAGCCTGTTGTGATCGCCGATTGCGGTCAACTCTCTTAG 585 0.5385 GRGGLFCISKYVLVCRIRENTKMANPKVYFDMSIGGQPAGRVVFELFADTVPRTAENFRALCTGEKGVGRGGKPLHYKGSSFHRVIPNFMCQGGDFTAGNGTGGESIYGSKFADENFIKKHTGPGILSMANAGPGTNGSQFFICTSKTEWLDGKHVVFGQVVEGMDVVKAVEKVGSSSGKTSKPVVIADCGQLS* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1100 194 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 29 191 IPR002130 GO:0000413|GO:0003755
Amo13g1100 194 Gene3D - 15 194 IPR029000 -
Amo13g1100 194 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 23 194 - -
Amo13g1100 194 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 29 192 IPR002130 GO:0000413|GO:0003755
Amo13g1100 194 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 23 194 - -
Amo13g1100 194 CDD cyclophilin_ABH_like 26 191 - -
Amo13g1100 194 PIRSF Peptidylpro_ismrse 16 194 IPR024936 GO:0003755
Amo13g1100 194 SUPERFAMILY Cyclophilin-like 18 193 IPR029000 -
Amo13g1100 194 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 77 94 IPR020892 GO:0003755|GO:0006457
Amo13g1100 194 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 153 168 IPR002130 GO:0000413|GO:0003755
Amo13g1100 194 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 125 140 IPR002130 GO:0000413|GO:0003755
Amo13g1100 194 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 140 152 IPR002130 GO:0000413|GO:0003755
Amo13g1100 194 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 46 61 IPR002130 GO:0000413|GO:0003755
Amo13g1100 194 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 82 94 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1100 Amo-Chr13 13940961 13942867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1100 40 174 U-box Gene Family AT5G67530 49.265 8.82e-30 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1100 K01802 - pvy:116118183 332.413