Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1097 ATGGGTTTTTGTAGATTTGGAAGAACCAAAACAAAAATTGCCAGACACAGACAGTGTGAAGAGAGTATATTTGTTTTGAATGATTTGGAATGGATCTCTAAAATTCCAGAATGTCCACCTCTTCGGCTTTCTAAATGGAATGAGAAAAATATAATGAACTTTTCAATGAGTGGAAGAAAATACACATATCATGAATTTGAGGCTCTAGCAAATCAGGCTTTTATCGGTTCGGCCGATGTGGAAAAAGAATTCTGGCATGAGATGGTGAACGGAGAGAAGGGAACCGTTGAGTACGGAGTCAATGTTGAGGGCAGTGCCTTTTCATGCCATCCTAATGACAAGCTTGGAAGAAGCAAATGGAATTTGAAGAATTTTTCAAGACTGCCGCAATCTACATTGAGATTAGTTGGCAAAGAAATTCCAGGAATAACTGATCCTATGCTTTATATTGGGATGCTGTTCAGCATGTTTGCATGGCATGTAGAAGATCATTACTTGTATAGCATAAATTATCACCATTCAGGTGCTAACAAAACTTGGTATGGAGTGCCTGCTCATGCAGCCTCTCAGTTTGAAAATGTTGTATTGCATCGTGTGTATAACCATGAAATCATGTTGAAACATGGCGAAGACGAGGCTTTCCAGCTTCTTGCGCATAAAACTACAATGTTCCCTCCAAATATATTGCTACAACATGGTGTCGCTGTTTACAAGGCTGTGCAGAAGCCAGGGGAGTTTGTCATCTCCTTTCCTAGAGCATATCATGCTGGATTTAGTCATGGTTTTAACTGTGGAGAAGCAGTGAACTTTGCTATTGGAGACTGGATTCCAATGGGGGCTATAGCTAGCACTCGTTATGCATATCTCACAATGCTTCCTATAATTCCATTTGAGGAACTTCTTTGTAAAGAGGCAATGCAGTTTTATAAGTCCTCAAAAGTAAGAGGTACCTTGATTTGTAGCAACTGCCATAGAGATTGTTATGTAGCTTACTTGATGTGCAAGCACTGCTATTCTCTTCCCATTTGTCTTTACCATGACATTGCATTGCAGAGGTGTTCATGTGGGAGAAAATATACTGTTTATAAAAGGGACGATTATCTAGAATTCGAGGATGCTGCTAAGAGTTTTGAACAAGAATATGTAAAGTTAAACCTTGAAGGGAAGGTGAATTTTGAAGTAGACATGTTATCCCCTAGAAATGATTATGATTGCATCCAAGATTCCCATAACCATCCTTGGCATGAAGAAAAAGGTAGCATCAAAGCAGTTCCTTCCATGGGCTTAGTTTCTGAACTGAAAACAAGAGAAATGACCTGCTTAAAGATCAAGTTAGAAAAGATGAAGGAGGAAAAAACTAAGCATGGTAGAAAAAGATGCTCTCCAACAATGGAAACCAGAAAACAAGTACACCAAAAATTGAGAGAAAAGCAAAGGATAAAAAATGATGAGCTTGCTCATGCATGA 1467 0.3879 MGFCRFGRTKTKIARHRQCEESIFVLNDLEWISKIPECPPLRLSKWNEKNIMNFSMSGRKYTYHEFEALANQAFIGSADVEKEFWHEMVNGEKGTVEYGVNVEGSAFSCHPNDKLGRSKWNLKNFSRLPQSTLRLVGKEIPGITDPMLYIGMLFSMFAWHVEDHYLYSINYHHSGANKTWYGVPAHAASQFENVVLHRVYNHEIMLKHGEDEAFQLLAHKTTMFPPNILLQHGVAVYKAVQKPGEFVISFPRAYHAGFSHGFNCGEAVNFAIGDWIPMGAIASTRYAYLTMLPIIPFEELLCKEAMQFYKSSKVRGTLICSNCHRDCYVAYLMCKHCYSLPICLYHDIALQRCSCGRKYTVYKRDDYLEFEDAAKSFEQEYVKLNLEGKVNFEVDMLSPRNDYDCIQDSHNHPWHEEKGSIKAVPSMGLVSELKTREMTCLKIKLEKMKEEKTKHGRKRCSPTMETRKQVHQKLREKQRIKNDELAHA* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1097 488 Coils Coil 431 451 - -
Amo13g1097 488 PANTHER LYSINE-SPECIFIC DEMETHYLASE 316 471 - -
Amo13g1097 488 Coils Coil 367 387 - -
Amo13g1097 488 MobiDBLite consensus disorder prediction 450 488 - -
Amo13g1097 488 SUPERFAMILY Clavaminate synthase-like 106 311 - -
Amo13g1097 488 Pfam JmjC domain, hydroxylase 147 270 IPR003347 -
Amo13g1097 488 SMART cupin_9 117 287 IPR003347 -
Amo13g1097 488 Gene3D Cupin 10 324 - -
Amo13g1097 488 PANTHER TRANSCRIPTION FACTOR JUMONJI FAMILY PROTEIN 316 471 - -
Amo13g1097 488 PANTHER LYSINE-SPECIFIC DEMETHYLASE 40 316 - -
Amo13g1097 488 ProSiteProfiles JmjC domain profile. 117 287 IPR003347 -
Amo13g1097 488 PANTHER TRANSCRIPTION FACTOR JUMONJI FAMILY PROTEIN 40 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1097 Amo-Chr13 13912649 13915447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1097 114 319 C2H2 Transcription Factor Family AT5G04240 45.631 2.72e-55 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Amo13g1097 JmjC 4e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1097 - - ahf:112732604 791.186