Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1089 ATGAGTGCTGAAGAAGCCAATAAAGATTGCCTAGCGTGGGCTGCAAGAGATTCATCTGGAGTCCTATCACCTTACAAATTCAGTCGCAGGCATGTCATCTTATATTTTGTTCAATCAAAGGCTCTTGGGAATGATGATGTTCACATAAAAATTACCCACTGTGGGGTTTGTTATGCTGATGTTGTTTGGACTAGGAATAAACATGGTGACTCCAAATATCCTGTAGTACCTGGACATGAGATTGCCGGGGTTGTGGAAAAAGTTGGTTCTAGTGTCCAGCGTTTCAAAGTTGGTGACCATGTTGGAGTAGGGACTTATGTCAACTCATGCAGGGATTGTGAGTATTGTAATGACAGACAAGAAGTTCATTGTGTGAAGGGAGCAGTTTATACCTTCAATGGCGTTGATGTTGATGGAACAATTACAAAAGGAGGATATTCAAGTTACATAGTAGTCCATGAAAGGTACTGTTATGTGATACCCAAGAATTACCCATTGGCTTCAGCTGCTCCACTGCTATGTGCTGGAATCACTGTTTACAGTCCCATGATGCGCCACAAAATGAATCAACCTGGCAAGTCTCTAGCAGTGATTGGTCTTGGTGGTCTTGGTCATATGGCAGTGAAATTTGGAAAGGCATTCGGGTTGAATGTAACAGTTATCAGCACCAGTGTATCCAAGAAAGAAGAGGCCCTGAGCCTACTCGGTGCAGATAAATTTGTTGTTTCAACTGATAAAGAGCAAATGGCGGCACTGGCTAAGTCTTTTGACTTTATAATTGATGCGGCTTCTGGTGATCATCCGTTTGATCCTTACATGGCACTGTTGAAGATATCTGGTGCTATGGTCCTGGTTGGGTTCCCTAGTGAAGTCAAATTCAGCCCTGCTAACCTTATTCTTGGTATGAGAACCATATCGGGGAGTGTTACTGGTGGCACAAAAGAGACACAAGAGATGATTGACTTCTGTGCCGCAAATGGAATTCACCCAAGCATAGAAGTGGTTCCAATAGAGTATGCAAATCAAGCTCTTGAGAGAATGATAAATAGGGATGTGAAATATCGTTTTGATCCCAACAACAAGGACATAGTGTATGAGCAATCTGCATCACCAGTGACACCATCAATCCAACTCACAAGAAACCGGAAAGACGCTACCCTGGGTAGCAGCACTGGTCGTGCCACTTACTACCAACCCATGCACCTGTGGGACAAAGCTTCAAGGAATCTCACACACTTCACAACCCATTTCTCCTTCATCATTGACTCCCAGAATCGAACTAACTATGCAGATGGCTTCGCATTCTTTCTTGCCCCTAACGGCTCGAAGCTCCCGAATGCGGGGGGAGGCACCTTGGGTCTCGTACCGAATAATCAGACACTCAACGCAACTGAAAACCCTTTTGTGGCTGTGGAGTTTGATATCTTCTCAAATGTTGAATGGGATCCACCAGCAGAACATGTCGGCATTGACATCAACTCAATGAGGTCTGCAGCTAACGTCACATGGTTCGCTGCGGATAGCATCATGCAAGGGAAGCTCAATCAGGCTTGGATCAGTTACGATGCTACTTCCCTCAATCTGAGTGTCACCTTCACTGGCTCTAACAATGGCACCACACTGCTGCAACATCTATCTGCCATAGTGGACTTGAGAACTTATCTTCCCGAACATGTTACCTTTGGATTCTCAGGTGCCACAGGAACTTCATTTGCTATACATCAAATTCTTTCATGGGATTTCAACTCGACTTTGCAAGAACTACAAGTCATTGTAAAGCCCCCAGCAATGTCTCCAAGCTACCCACATGTAGTTACCAAAAAGAAGAAAGAGGCCAACAACACAGGACTAGCAGTAGGATTGGCCATGGGCGGGGTGGTTGTGGTTTTGGGTTTGGGCTTGGTTTCGTTTAAATTGTGGAAGAAAGGAAGTGATGATGAAGAGGAAGATGATCAAGATTTTGAGGAGCATATGGGGGAGGATTTTGGAAGGGGAACCGGGCCTAAAAGGTATTCATATGCTGAATTAGCACGTGCAGCGGATAATTTCAAAGATGAGAACAAGCTTGGTCAGGGTGGATTTGGAGGTGTCTATAGAGGGTACCTTAAAGATATCAACTCCTATGTTGCTATCAAGAGGGTGTCAGAACATTCTCATCAAGGAATAAAGGAATTCGCATCGGAAGTAAAGATCATTAGCCGGCTTAGGCACCGAAATCTTGTGCAACTGATTGGTTGGTGTCCGAAAAGGAAGAAGCTCTTGCTTGTATATGAGTACATGCCTAATGGAAGCTTAGATGTTCATCTTTTCAACAAGCAGAATCTGCTGAGATGGACAGTTAGATACAACATAGCTCGAGGCTTGGCGGCCGCACTGCTATACTTGCACGAAGAATGGGAACAATGTGTTGTCCATAGGGACATCAAATCAAGCAACATCATGCTGGATTCAGAGTTCAATGCCAAACTTGGGGATTTTGGGCTAGCAAGGCTTGTTGACCATGCAAAAGGCGCGCAAACCACGGCTCTAGCCGGTACTCTGGGCTACATGGCTCCCGAATGCAATACCACATTCAGGGCTACTAAAGAATCAGATGTGTACAGTTTTGGAGTTGTGGCATTGGAGATAGCGTGTGGAAGGAAACCCATCAAATATAATGCTCCGGAAAGGGAAATCAATATTGTAGAATGGGTGTGGGGTCTCTATGGAAGTGGAAGAATTCTTGAAGCAGCTGATGAAAGGCTAGATGGAGATTTTGTGGAGGAACAAATGAAATGCTTGATGGTTGTTGGGCTGTGGTGTGCTCACCCTGATCATAGACGCAGGCCTTCAATGAGGCAAGCAATTCAAGTGCTTAACTTTGAAGCTCCATTACCCACTCTTCCATTGAGTTTGCCTGTCCCTACCTATGTTCACCCGTCTTCTAATTTAGCTCCATTCAGCATAGACAATTCTTCAGGGGATGTCCAATACCAGACCATGAGCTCCAGCTCAAACTCAAACACAACCTCCTCCGGTGTCACCACAACTTCTGATGATGGATCTCCCTCTAAGTCACTTCTATACTCGTGGTAA 3075 0.4485 MSAEEANKDCLAWAARDSSGVLSPYKFSRRHVILYFVQSKALGNDDVHIKITHCGVCYADVVWTRNKHGDSKYPVVPGHEIAGVVEKVGSSVQRFKVGDHVGVGTYVNSCRDCEYCNDRQEVHCVKGAVYTFNGVDVDGTITKGGYSSYIVVHERYCYVIPKNYPLASAAPLLCAGITVYSPMMRHKMNQPGKSLAVIGLGGLGHMAVKFGKAFGLNVTVISTSVSKKEEALSLLGADKFVVSTDKEQMAALAKSFDFIIDAASGDHPFDPYMALLKISGAMVLVGFPSEVKFSPANLILGMRTISGSVTGGTKETQEMIDFCAANGIHPSIEVVPIEYANQALERMINRDVKYRFDPNNKDIVYEQSASPVTPSIQLTRNRKDATLGSSTGRATYYQPMHLWDKASRNLTHFTTHFSFIIDSQNRTNYADGFAFFLAPNGSKLPNAGGGTLGLVPNNQTLNATENPFVAVEFDIFSNVEWDPPAEHVGIDINSMRSAANVTWFAADSIMQGKLNQAWISYDATSLNLSVTFTGSNNGTTLLQHLSAIVDLRTYLPEHVTFGFSGATGTSFAIHQILSWDFNSTLQELQVIVKPPAMSPSYPHVVTKKKKEANNTGLAVGLAMGGVVVVLGLGLVSFKLWKKGSDDEEEDDQDFEEHMGEDFGRGTGPKRYSYAELARAADNFKDENKLGQGGFGGVYRGYLKDINSYVAIKRVSEHSHQGIKEFASEVKIISRLRHRNLVQLIGWCPKRKKLLLVYEYMPNGSLDVHLFNKQNLLRWTVRYNIARGLAAALLYLHEEWEQCVVHRDIKSSNIMLDSEFNAKLGDFGLARLVDHAKGAQTTALAGTLGYMAPECNTTFRATKESDVYSFGVVALEIACGRKPIKYNAPEREINIVEWVWGLYGSGRILEAADERLDGDFVEEQMKCLMVVGLWCAHPDHRRRPSMRQAIQVLNFEAPLPTLPLSLPVPTYVHPSSNLAPFSIDNSSGDVQYQTMSSSSNSNTTSSGVTTTSDDGSPSKSLLYSW* 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1089 1024 SMART serkin_6 683 952 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g1089 1024 Gene3D - 175 330 - -
Amo13g1089 1024 CDD lectin_legume_LecRK_Arcelin_ConA 356 585 IPR001220 GO:0030246
Amo13g1089 1024 MobiDBLite consensus disorder prediction 645 666 - -
Amo13g1089 1024 Gene3D Phosphorylase Kinase; domain 1 668 759 - -
Amo13g1089 1024 Pfam Zinc-binding dehydrogenase 202 324 IPR013149 -
Amo13g1089 1024 Pfam Alcohol dehydrogenase GroES-like domain 45 158 IPR013154 -
Amo13g1089 1024 SUPERFAMILY Protein kinase-like (PK-like) 667 986 IPR011009 -
Amo13g1089 1024 MobiDBLite consensus disorder prediction 988 1024 - -
Amo13g1089 1024 Pfam Legume lectin domain 355 587 IPR001220 GO:0030246
Amo13g1089 1024 ProSitePatterns Serine/Threonine protein kinases active-site signature. 803 815 IPR008271 GO:0004672|GO:0006468
Amo13g1089 1024 Gene3D - 356 593 - -
Amo13g1089 1024 PANTHER RECEPTOR LECTIN KINASE 359 1019 - -
Amo13g1089 1024 ProSitePatterns Protein kinases ATP-binding region signature. 689 712 IPR017441 GO:0005524
Amo13g1089 1024 ProSiteProfiles Protein kinase domain profile. 683 961 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g1089 1024 Gene3D Transferase(Phosphotransferase) domain 1 760 972 - -
Amo13g1089 1024 SUPERFAMILY Concanavalin A-like lectins/glucanases 358 587 IPR013320 -
Amo13g1089 1024 SUPERFAMILY GroES-like 37 193 IPR011032 -
Amo13g1089 1024 Gene3D - 13 355 - -
Amo13g1089 1024 SMART PKS_ER_names_mod 20 352 IPR020843 GO:0016491
Amo13g1089 1024 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 78 92 IPR002328 GO:0008270|GO:0016491
Amo13g1089 1024 Pfam Protein kinase domain 683 950 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g1089 1024 CDD CAD1 12 356 - -
Amo13g1089 1024 PANTHER - 359 1019 - -
Amo13g1089 1024 CDD STKc_IRAK 689 953 - -
Amo13g1089 1024 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 165 328 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1089 Amo-Chr13 13654349 13659235 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1089 355 970 Receptor kinase-like Gene Family AT5G10530 47.528 0.0 545
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Amo13g1089 Pkinase 1.5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1089 - - gsj:114419429 879.782