Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1085 ATGGCTGATTGTGATTTCCAGTGCGTTGCATTGCTGCTTATAATAATAATTCCTGTAATTGCAAATGCTGAGAGTCTATTATCTTTTAACTGCACCAACTTCACCCAAGGTCATTGTGCTGATGAACTAACCCTGCAAGGTGATGCTAGTCACGCACAATCTTCTAACGTTATCGAACTCGCAGGAAGCAAAAAGAATGCTTCAGGATTTGGAAGAGTGGTAACAAAGGCAACACATCTTAAGGTAAATAATTCAAGATACGACTTCACCACAAACTTCTCCTTTCTTGTTTTCACAGAGGATCCCACCTATCCTGGAGATGGTTTGGCATTCTACATAGCAAGCCCGAAACTCCCGATCCAAGACCATATAGACGGCGGAGGCCTCGGCCTTGCCAAGTCTTACCACCACCTCCCAAGTGGTTACTCTTTTGTGGCTCTGGAGTTTGACACATTCTCAAATGGATGGGATCCAAGTGGTCCATTCCCGCATGTAGGACTAGATCTCAATTCTGTTGTTTCCAGCCTCTCTGAGACATGGTTGGTAGATTTTTCAGAGAGAAATAAAGTGTTCAATTGTAGTATTGAGTACAACTCTGGAACCAAGCGTCTAGATGCTTTCTTCACTGCAAGCTCCTTCAATGGACCTGTAAAGAAGCAATTTTCGTTTCCTTTGGATCTCGATGAGTTCATACAAGATCCTGTTACTATTGGCATATCAGCTGCAGTTGCAGAAAAAAATTATACGGTGGGATATAGCTTGTTGTCATGGTCATTCAGTTCAACCTTACATGTGCCGAGTAATGCGGCCGGTTCCTTTCCTTACAAGGCACATTTGGAGAAAGCACTAGAAATAGGGATTGGTTTCTTTCTGTGTTTATTTGTTTTGGTATTAGTCCTACTCCTCATTTTGATACGGAGGGGAGGGAAAAGAGATCCTGAATCCGCGTTTGATCCGATGGATCATGAATTCCAAACGGGCACTGGACCACAGAGGATCAGCTATGACAGATTGGTGTGTGCGACGGATAACTTCCAAGAGGCGAAGAAGCTTGGAAGAGGCGGCTTTGGTGCTGTGTATAAAGGATATTTCAAAGATACAGACTCTTATGCTGCTGTAAAGAAGATATCTGCAGATTCAAAGCAGGGATTAAAGGAATATGCAGCTGAAGTGAAGATCATTAGCCAATTGAGACACAGGAATTTGGTGAGACTTACTGGTTGGTGTCACAAGAAGAATGACTTCGTCCTGATATATGAGTACATGCCGAATGGAAGCTTGGATTCTTTTCTTTTCCACGGAGTAGGCTTCTTGTCTTGGCAAGTAAGGTACAACATAGCTTTGGGATTGGCATCGGCATTGCTATATCTGCAAGAAGGGTGGGAAAAGTGTGTGCTTCACAGGGACATTAAATCAAGCAACATAATGTTGGACTCAGATTTCAATGCTAAACTTGGGGATTTTGGATTGGCCAGGCTTGTGGATCATGAGAAAGGTTCAAGGACCACAGTGACTGCTGGCACACTTGGTTACATGGCACCAGAATACATGAAAACAGGAAAAGTTCGAAAGGAATCTGATATATACAGTTTTGGGGTGGTTTTGTTGGAGATAGCAAGTGGCAAAAAGGTTATGCACCACATAGAATTGGAGGGTCGTGTGACTCAAGTTTCATTGGTAGAGTGGGTTTGGGAGCTGTATGGGTTGAGAAACATCACAGCAGCAGCAGATCCAAATCTATGTGTTGCATTTGATGTTCAACAAATGGAATGTATGCTTGTTGTTGGTCTTTGGTGTGCTCATCCAGATTGCAAATGCAGGCCCTCTGTAAGGCAAGTGATGAAAGTGCTTAACTTTGATGCTTCTTTACCCATTCTTCCAGAAAGAATGCCTCTTTTACCCTATCTCCCCTCAACCACAAATGAACTCTTTTTAACTGCTGTTTCTTCGTTTTCTGGTACCTAA 1965 0.429 MADCDFQCVALLLIIIIPVIANAESLLSFNCTNFTQGHCADELTLQGDASHAQSSNVIELAGSKKNASGFGRVVTKATHLKVNNSRYDFTTNFSFLVFTEDPTYPGDGLAFYIASPKLPIQDHIDGGGLGLAKSYHHLPSGYSFVALEFDTFSNGWDPSGPFPHVGLDLNSVVSSLSETWLVDFSERNKVFNCSIEYNSGTKRLDAFFTASSFNGPVKKQFSFPLDLDEFIQDPVTIGISAAVAEKNYTVGYSLLSWSFSSTLHVPSNAAGSFPYKAHLEKALEIGIGFFLCLFVLVLVLLLILIRRGGKRDPESAFDPMDHEFQTGTGPQRISYDRLVCATDNFQEAKKLGRGGFGAVYKGYFKDTDSYAAVKKISADSKQGLKEYAAEVKIISQLRHRNLVRLTGWCHKKNDFVLIYEYMPNGSLDSFLFHGVGFLSWQVRYNIALGLASALLYLQEGWEKCVLHRDIKSSNIMLDSDFNAKLGDFGLARLVDHEKGSRTTVTAGTLGYMAPEYMKTGKVRKESDIYSFGVVLLEIASGKKVMHHIELEGRVTQVSLVEWVWELYGLRNITAAADPNLCVAFDVQQMECMLVVGLWCAHPDCKCRPSVRQVMKVLNFDASLPILPERMPLLPYLPSTTNELFLTAVSSFSGT* 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1085 654 CDD STKc_IRAK 351 618 - -
Amo13g1085 654 ProSitePatterns Protein kinases ATP-binding region signature. 351 375 IPR017441 GO:0005524
Amo13g1085 654 Pfam Protein kinase domain 345 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g1085 654 PANTHER LECTIN RECEPTOR KINASE 17 652 - -
Amo13g1085 654 Pfam Legume lectin domain 27 265 IPR001220 GO:0030246
Amo13g1085 654 CDD lectin_legume_LecRK_Arcelin_ConA 27 263 IPR001220 GO:0030246
Amo13g1085 654 PANTHER - 17 652 - -
Amo13g1085 654 ProSiteProfiles Protein kinase domain profile. 345 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g1085 654 Gene3D Transferase(Phosphotransferase) domain 1 422 633 - -
Amo13g1085 654 SUPERFAMILY Concanavalin A-like lectins/glucanases 26 269 IPR013320 -
Amo13g1085 654 SUPERFAMILY Protein kinase-like (PK-like) 329 638 IPR011009 -
Amo13g1085 654 ProSitePatterns Serine/Threonine protein kinases active-site signature. 465 477 IPR008271 GO:0004672|GO:0006468
Amo13g1085 654 SMART serkin_6 345 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g1085 654 Gene3D Phosphorylase Kinase; domain 1 330 421 - -
Amo13g1085 654 Gene3D - 25 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1085 Amo-Chr13 13591957 13593921 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1085 13 635 Receptor kinase-like Gene Family AT5G10530 42.633 7.03e-162 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Amo13g1085 Pkinase 1.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1085 - - cam:101492002 619.387