Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1057 ATGGGTGACAATGAAGACTCCAACAACAATAATGACATGATGCAAAGGCTTCAATCCTCATTCGGAACGACGTCGTCTTCGTCGTCTTCGTTTCTCAAACAGACTCTTACCATGGAGCAGCTCACAATACCCCAATTCCAACAAATGCGTGCTAATAACAATAATCAGCAACAACATTTCTACGGTGGAGATGGAATGAAGCGTGCGGGTATACCACCGTCTCACCCGCACCAGATCCCGCCCATTTCCCCATACTCTCAGATCCCGCGCTCCACACTCACTCACCACCAAATGGGTTCACCTACACCCACCCACACCCGATCCCTATCCCAACCATCGTTCTTCTCACTCGACTCTCTCCCACCGCTAAGCCCCTCTCCCTTCCGCGGCGCTGACTCCTCAACTTCAATCTCCGACCAAGCCTCCGCTGACGTCTCCATGGAAGATCGTGACGTCAGCAGCCACCAACAGCAACAGCAACAACACTCTCTCCTCCCTCCGTCTTCGCCTTTCTCATCTGCCCGGGGCACCGGCAACCCMCTGCCCCCTCCTCGGAAAACGCACCGTCGCTCCAACAGCGATATACCGTTTGGATTCTCCACCATTTTGCAGTCGTCGCCGCCGCTGATTCCGTTGAAGAAGCCTGCGCAGCTTGTTAAGAAGGAATCTGGTTCCTGGAGTAGCGCTGATCCCAATGCGGAGGGATCAGGGGAGAAGAAGCTCTCCCCTGAAGGTGAAGTAGTTGATGATCTTTTCTCTGCTTACATGAACTTGGATAGCATCAATGACGCGTTTAACAATAATTCATCTGATGAGAAGAACGGTAACGAGATTATTATTAATAATAACAATAGTAATCGTGATGATTTGGATAGTAGAGCTAGTGGAACCAAGACTAGTAACAACAATGGTGGTGGTGATAGTAGTGATAATGAAGCTGAGAGTAGCGGCAACTCAATGATGAGTCAGAGTTGTGGGGAGAAGAGGGATGGTGTTAAGAAGAGGAGTGCTGCTGGTGAGGTTGTTGGCGGCGTCGCTCCCACGAGCCGCCACTATAGGAGTGTGTCTATGGATAGTTTCATTGGCAAGTTGAATTTCAATGATGAGTCGCCAAGGTTGCCGCCATCGCCTGGGTCTGCTCGGCCGCCTTCCTCGAATGGAATTGATGGGAACACTGGTGCTTTCAGCTTGGAGTTTGGGAATGGTGAGTTTAGTGGCCCTGAGTTGAAGAAGATCATGGCCAATGAGAAGCTTGCTGAGATTGCTATGATGGATCCTAAGCGTGCAAAGAGGATTCTGGCCAATCGGCAGTCAGCTGCACGATCCAAAGAAAGGAAGATGCGGTACATTTCTGAGCTGGAACATAAGGTCCAGACCCTACAAACTGAGGCCACCACACTCTCTGCACAGCTTACTCTGTTGCAGAGGGATTCTGTTGGACTCACTAACCAAAATAGTGAGCTCAAATTTCGCCTTCAATCCATGGAACAACAGGCAAAACTCCGAGATGCTCTAAACGAGGCTCTCACTGCCGAGGTTCAACGACTAAAGCTCGCTACGGCCGAGCTGAACGGGGAGTCGCACTCATCCGGTTGCTTGATTCCGCAACATTCTGTCAACCCTCTGATGTTTCAGCAGCAGCAGCAAGCTTCTACTGCATCTCAACAAAACATTCATCTTCAACAACAACAGCGGCAGAATGGTAATACCAACTCACAAACCGATCTAAAACAATAA 1737 0.4986 MGDNEDSNNNNDMMQRLQSSFGTTSSSSSSFLKQTLTMEQLTIPQFQQMRANNNNQQQHFYGGDGMKRAGIPPSHPHQIPPISPYSQIPRSTLTHHQMGSPTPTHTRSLSQPSFFSLDSLPPLSPSPFRGADSSTSISDQASADVSMEDRDVSSHQQQQQQHSLLPPSSPFSSARGTGNPLPPPRKTHRRSNSDIPFGFSTILQSSPPLIPLKKPAQLVKKESGSWSSADPNAEGSGEKKLSPEGEVVDDLFSAYMNLDSINDAFNNNSSDEKNGNEIIINNNNSNRDDLDSRASGTKTSNNNGGGDSSDNEAESSGNSMMSQSCGEKRDGVKKRSAAGEVVGGVAPTSRHYRSVSMDSFIGKLNFNDESPRLPPSPGSARPPSSNGIDGNTGAFSLEFGNGEFSGPELKKIMANEKLAEIAMMDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNSELKFRLQSMEQQAKLRDALNEALTAEVQRLKLATAELNGESHSSGCLIPQHSVNPLMFQQQQQASTASQQNIHLQQQQRQNGNTNSQTDLKQ* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1057 578 SMART brlzneu 423 487 IPR004827 GO:0003700|GO:0006355
Amo13g1057 578 MobiDBLite consensus disorder prediction 261 338 - -
Amo13g1057 578 MobiDBLite consensus disorder prediction 545 578 - -
Amo13g1057 578 Pfam bZIP transcription factor 427 481 IPR004827 GO:0003700|GO:0006355
Amo13g1057 578 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 109 573 - -
Amo13g1057 578 MobiDBLite consensus disorder prediction 84 120 - -
Amo13g1057 578 MobiDBLite consensus disorder prediction 152 176 - -
Amo13g1057 578 SUPERFAMILY Leucine zipper domain 427 478 IPR046347 GO:0003700|GO:0006355
Amo13g1057 578 MobiDBLite consensus disorder prediction 47 245 - -
Amo13g1057 578 MobiDBLite consensus disorder prediction 261 325 - -
Amo13g1057 578 MobiDBLite consensus disorder prediction 366 393 - -
Amo13g1057 578 MobiDBLite consensus disorder prediction 128 143 - -
Amo13g1057 578 MobiDBLite consensus disorder prediction 1 31 - -
Amo13g1057 578 Coils Coil 443 477 - -
Amo13g1057 578 Coils Coil 506 526 - -
Amo13g1057 578 MobiDBLite consensus disorder prediction 47 61 - -
Amo13g1057 578 CDD bZIP_plant_RF2 428 477 IPR044759 GO:0003700|GO:0006355
Amo13g1057 578 Gene3D - 426 478 - -
Amo13g1057 578 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 425 488 IPR004827 GO:0003700|GO:0006355
Amo13g1057 578 MobiDBLite consensus disorder prediction 193 207 - -
Amo13g1057 578 PANTHER BASIC-LEUCINE ZIPPER (BZIP) TRANSCRIPTION FACTOR FAMILY PROTEIN 109 573 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1057 Amo-Chr13 12757394 12761551 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1057 1 546 bZIP Transcription Factor Family AT4G38900 54.497 1.59e-162 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Amo13g1057 bZIP_1 8e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1057 - - aip:107628829 922.154
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g1057 13 12757394 12761551 Amo13g1057 13 12757394 12761551 ECH