Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1053 ATGGGGTTTAGAAAATCAAACAAGATTTCACAAAGTGCGGTCTTGAAGCAAATATTGAAGAGGTGTTCGAGCTTAGGGAAGAAGAATAGTAACAACAATGGATATGAAAATAATAACAACGATCCTTTTCCTCTTGATGTTCCAAAAGGGCACTTTGCTGTTTATGTTGGTGAGAATAGAAGAAGGTACATTGTTCCGATTTCGTTGTTGGGTAATCCTGAATTTCAATGCCTTCTTCGTCAAGCCGAAGAAGAATTCGGGTTTGAACATGACATGGGTCTCACTATTCCTTGTGAAGAAGTTGTTTTTCTCCGCTCCTTAACTACTTCAAGTTGA 336 0.3839 MGFRKSNKISQSAVLKQILKRCSSLGKKNSNNNGYENNNNDPFPLDVPKGHFAVYVGENRRRYIVPISLLGNPEFQCLLRQAEEEFGFEHDMGLTIPCEEVVFLRSLTTSS* 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1053 111 Pfam Auxin responsive protein 20 107 IPR003676 GO:0009733
Amo13g1053 111 PANTHER SMALL AUXIN-UP RNA-RELATED 7 109 - -
Amo13g1053 111 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 7 109 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1053 Amo-Chr13 12694391 12694726 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1053 5 103 Calmodulin-binding Proteins AT4G34750 45.455 3.29e-20 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1053 K14488 - rcu:107260773 153.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g1053 13 12694391 12694726 Amo13g1053 13 12694391 12694726 ECH
Amo13g1053 13 12694391 12694726 Amo17g2158 17 111123411 111126032 ECH