Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1040 ATGGACAAAATAAATACTGAACATTTAATGCTGACATTATTTGTTGCTGGAACGGATACAATCACATCTACATTAGAATGGGCAATGACTGAATTACTCAGCAATCCAAATACTATGAAAAGGGCTAAAAGAGAGCTTGAAGAAACCATTGGAAAGGGAAACCAAGTTGAGGAATCAGACATAGCAAGATTACCATATTTAGAAGCAATATTGAAAGAGACATTTCGTTTGCCCCCTTCAGTGCCATTTTTGATCCCAAGAAAAGCTGACACTGATGTAGAAATCAATGGCTATACTATACCAAAAGGTTCACAATTGCTAATCAATGTTTATGCTATTGGAAGGGATTCAAATGTGTGGAAGAATGACACGAATTTGTTCTCACCAGAGAGGTTCTTGGGATTAGAAACTCATGTTAAAGGGAGGCATTTTGAGTTGATACCATTTGGTGCTGGTAGAAGAATATGTCCTGCTTTATCATATGCTATGAAGATTTTGTTCTTGATGTTAGGCTCATTGCTTAATTGTTTTGATTGGAAGCTTGAAAATGATTCGAAAGCTGAGGATATTGATAAAAAACAAGAATTTGGAATATCATTAAGAAAGGCTAAACCCCTGAGAGCCATTCCAATCAAAGTAAATAACTAA 648 0.3549 MDKINTEHLMLTLFVAGTDTITSTLEWAMTELLSNPNTMKRAKRELEETIGKGNQVEESDIARLPYLEAILKETFRLPPSVPFLIPRKADTDVEINGYTIPKGSQLLINVYAIGRDSNVWKNDTNLFSPERFLGLETHVKGRHFELIPFGAGRRICPALSYAMKILFLMLGSLLNCFDWKLENDSKAEDIDKKQEFGISLRKAKPLRAIPIKVNN* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1040 215 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 1 214 - -
Amo13g1040 215 Coils Coil 39 59 - -
Amo13g1040 215 SUPERFAMILY Cytochrome P450 7 210 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo13g1040 215 Pfam Cytochrome P450 3 201 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo13g1040 215 PRINTS P450 superfamily signature 16 33 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo13g1040 215 PRINTS P450 superfamily signature 69 80 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo13g1040 215 PRINTS P450 superfamily signature 147 156 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo13g1040 215 PRINTS E-class P450 group I signature 5 22 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo13g1040 215 PRINTS E-class P450 group I signature 25 51 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo13g1040 215 PRINTS E-class P450 group I signature 68 86 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo13g1040 215 PRINTS E-class P450 group I signature 146 156 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo13g1040 215 PRINTS E-class P450 group I signature 156 179 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo13g1040 215 PANTHER CYTOCHROME P450 FAMILY PROTEIN 1 214 - -
Amo13g1040 215 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 149 158 IPR017972 GO:0005506|GO:0016705
Amo13g1040 215 Gene3D Cytochrome P450 1 209 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1040 Amo-Chr13 12644158 12645166 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1040 7 212 Cytochrome P450 AT1G33720 57.767 3.15e-84 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1040 - - ahf:112735734 432.95