Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1010 ATGTTTCAGACAGCTGAGAACGTTGAAGCCATAGTTCTGCGAACATATGATGAAGCTGGGAAAGAGTTGTCAGCTGAAACTTTGTCACAAATGAGTGGCCTGAAATTACTCATACTTCCCAAAGGAAATTTTTCTGGAAGCCTGCATTTTCTTTCTAATGAGTTGGGATATCTTGATTGGAAAGAATATCCTTTCACATATTTGCCATCAAACTTTCAGCCAAATAAACTAGTTAAATTAATCCTTAAGTATAGCAACATCAAAGAACTCTGGGAGGGAATAAAGGATCTACATAACTTGACACATATGGAACTATGTCATTCCAAAAATCTGGTAAAGATACCAAATTTATCACAGGCCCCAAATCTTGAGCACCTAGATCTTGAAGGATGTGTTAAACTTGTTCACCTTGATGCTTCCACTGGTTCTCTAGAAAAGCTTCATTTTTTGAATCTGAAAAACTGCAGAAGTCTTGTTAGTATTCCCAATAGCATATTTTGTCTTAATTCACTGTATGATTTAAATCTATCTGGCTGCAAGAGATTGTTTAAATATCAGTTGTTAGAGAAATCCAGGCAAAGTGAGCAGTTGAATGCGGGTCAAAGTGTAGAAAGGCACATGACATCATCCATACGCAAAACTCTTTCAAGGCCTCTTCAGTTTTTGTCTTCTAGAAGGCGTGCCAATTCAGTTGGTTTGTTGGTGCCTTCTGTGTCTCGTTTCCCAGCTTTGGTATCTCTTGATATAAGTTTCTGTAATCTGATTCAAATCCCTGATGCTATTGGACTGTTACGTTGTTTAGAAGATTTAAACATAGGGGGGAACAATTTTGTGACGCTACCTCATTGCATCAAGGAACTTCCCAAGCTAACTTGGTTGAATTTGGAGCACTGTAAGCATCTAAAGTGGATGCCTAGTACCCTTTTGCCGATACGAGGAGGTAGCAATGGAGGAATATTTGTTTACAACTGCCCCAATTTGAGTGACACGGAAGGTTGTCGTGTCACAGTTATTTCATGGATGATAAAAATGATTCAGGTGAACATGCAATGCCCTTTAATTAAATGCAAATTTGAAGTTGTTATTCCAGGAAATGAAATTCCAAGGTGGTTCAAAAAACAGAATACGGGTGATTCAGTGATCTTGGATCCATCTCCCATTCTGGATGACAATAATTGGATTGGCATTGCTTGTTGTGGAACATTTGTTGCACATCATGCTCCAACTCAATTGTTTGAAGAAACAATAGAATCTCAAGATCTAATTAGTTTTGGTTTTCGTTGTACTCGTTCTGATGGGAACATTTATTCCCGAGTTCCAATATGTCTTAAGAAAGATTTGATCACAACTGAAGTAGATCATATGTTGTTAAGCTTTATCTCCCGGGAAGTTTTCATTAATTTTTATGCAAGTCATATAAAAGAAGGAGCATCTGATCTTCATGGTATTAAATTGCATGCCGCAAGTGATTATCCAGAAGAAGTAGTAGAAGTGAAGAGGTGTGGTTACCGTTGGGTATTTAAGGAAGATTTGGAACAATTTAACCCAACAATGATGTACAGTGCCAATTCTTCAGCTCAGAGTCCGAAGCACAAGTTTCTGGCAATTCAAGATCACCAATAA 1623 0.3777 MFQTAENVEAIVLRTYDEAGKELSAETLSQMSGLKLLILPKGNFSGSLHFLSNELGYLDWKEYPFTYLPSNFQPNKLVKLILKYSNIKELWEGIKDLHNLTHMELCHSKNLVKIPNLSQAPNLEHLDLEGCVKLVHLDASTGSLEKLHFLNLKNCRSLVSIPNSIFCLNSLYDLNLSGCKRLFKYQLLEKSRQSEQLNAGQSVERHMTSSIRKTLSRPLQFLSSRRRANSVGLLVPSVSRFPALVSLDISFCNLIQIPDAIGLLRCLEDLNIGGNNFVTLPHCIKELPKLTWLNLEHCKHLKWMPSTLLPIRGGSNGGIFVYNCPNLSDTEGCRVTVISWMIKMIQVNMQCPLIKCKFEVVIPGNEIPRWFKKQNTGDSVILDPSPILDDNNWIGIACCGTFVAHHAPTQLFEETIESQDLISFGFRCTRSDGNIYSRVPICLKKDLITTEVDHMLLSFISREVFINFYASHIKEGASDLHGIKLHAASDYPEEVVEVKRCGYRWVFKEDLEQFNPTMMYSANSSAQSPKHKFLAIQDHQ* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1010 540 Pfam Leucine Rich Repeat 76 95 IPR011713 -
Amo13g1010 540 Pfam C-JID domain 362 512 IPR045344 -
Amo13g1010 540 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 343 517 - -
Amo13g1010 540 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 11 304 - -
Amo13g1010 540 Gene3D Ribonuclease Inhibitor 226 340 IPR032675 -
Amo13g1010 540 Gene3D Ribonuclease Inhibitor 13 212 IPR032675 -
Amo13g1010 540 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 304 IPR044974 GO:0006952
Amo13g1010 540 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 343 517 IPR044974 GO:0006952
Amo13g1010 540 SUPERFAMILY L domain-like 21 306 - -
Amo13g1010 540 Pfam Leucine rich repeat 242 299 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1010 Amo-Chr13 12427549 12429689 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1010 43 293 WRKY Transcription Factor Family AT4G12020 37.931 1.67e-30 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1010 - - ahf:112732546 990.719