Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1001 ATGGCTTTCCGCATTCCAGGTATTAGAAAGGCATCACTTTCTGCATCAAAAGGGACTAATGTTCCAAAAGGCTATCTTGCAGTCTATGTGGGAGATAAGATGAGGCGGTTTGTGATTCCTGTATGTTACTTGAACCAGCCTTCATTTCAAGAATTACTAAGCCAATCAGAAGAAGAATTCGGTTATGATCACCCAACAGGTGGTCTCACAATTCCATGCAGCGAGGATGCCTTCCTGAACCTCACTTGTCAATTAAGTGGGCAGTAA 267 0.4307 MAFRIPGIRKASLSASKGTNVPKGYLAVYVGDKMRRFVIPVCYLNQPSFQELLSQSEEEFGYDHPTGGLTIPCSEDAFLNLTCQLSGQ* 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1001 88 Pfam Auxin responsive protein 12 84 IPR003676 GO:0009733
Amo13g1001 88 PANTHER AUXIN-INDUCED PROTEIN 10A5 12 86 - -
Amo13g1001 88 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 12 86 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1001 Amo-Chr13 12392602 12393096 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g1001 20 78 Calmodulin-binding Proteins AT3G43120 55.932 2.49e-19 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1001 K14488 - gmx:100806671 128.642
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g1001 13 12392602 12393096 Amo13g1001 13 12392602 12393096 ECH