Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0959 ATGGGCAGAGTAATCTCTTTCCTCGTTCAGCCGCGATTCGTCCTTTTATACCTTGTGCTTTCAATCTTCATCATTTTCGCGCTCTATGGCTCTAAACAAGACGAGGTGATGATATTAGAAGAGGATCCTGAAATTACACACAGGGTTTTTTTGGATATTGATATTGATAAACAGCGCTTAGGTAGGATCGTGATTGGATTATATGGCCATGTTGTACCAAAAACTGTTGAAAATTTCAGAGCTTTGTGCACAGGGGAGAAAGGCAAGAGTTCTAGTGGCGTAAAACTTCACTACAAAGGAACACCACTTCATCGGATAATATCTGGTTTTGTGATTCAGGGTGGAGACATTGTTCATCGTGATGGCAAAGGATCTGAATCTATTTATGGTGGCACCTTTCCTGATGAGAATTTCAAGATAAAAAACTCTCATGCTGGTGTTGTTGCTATGGCAAATTCAGGACCTGATTCAAATGGCTCCCAGTTTTTTATTACCACAGTGAAGGCCTATTGGTTGGATGGTGAGCATGTTGTCTTTGGAAAGGTTATTCAAGGCATGGATAATGTGTTTGCGATCGAAGGGGGAGCTGGAACGTATAGCGGAAAACCCAGAAAGAAGGTGGTGATTGCAGATTGTGGAGAGATACCCAAGAGCCAGTGGGATGAGGAAATTTCAACTTCCAAATCAGTGACAACAACATAA 702 0.4174 MGRVISFLVQPRFVLLYLVLSIFIIFALYGSKQDEVMILEEDPEITHRVFLDIDIDKQRLGRIVIGLYGHVVPKTVENFRALCTGEKGKSSSGVKLHYKGTPLHRIISGFVIQGGDIVHRDGKGSESIYGGTFPDENFKIKNSHAGVVAMANSGPDSNGSQFFITTVKAYWLDGEHVVFGKVIQGMDNVFAIEGGAGTYSGKPRKKVVIADCGEIPKSQWDEEISTSKSVTTT* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0959 233 Gene3D - 38 221 IPR029000 -
Amo13g0959 233 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 50 214 IPR002130 GO:0000413|GO:0003755
Amo13g0959 233 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 67 82 IPR002130 GO:0000413|GO:0003755
Amo13g0959 233 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 103 115 IPR002130 GO:0000413|GO:0003755
Amo13g0959 233 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 146 161 IPR002130 GO:0000413|GO:0003755
Amo13g0959 233 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 161 173 IPR002130 GO:0000413|GO:0003755
Amo13g0959 233 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 174 189 IPR002130 GO:0000413|GO:0003755
Amo13g0959 233 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 39 223 - -
Amo13g0959 233 SUPERFAMILY Cyclophilin-like 43 215 IPR029000 -
Amo13g0959 233 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 39 223 - -
Amo13g0959 233 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 53 213 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0959 Amo-Chr13 11945692 11949061 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0959 61 209 U-box Gene Family AT5G67530 42.000 2.46e-25 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0959 - - gmx:100800775 375.17