Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0952 ATGAGTAGGGTTTGCGGTAAGGTGAAGTGGTTCAATGACCAGAAGGGTTTCGGTTTCATAACCCCCGACGATGGCGGCGAAGAACTCTTTGTTCATCAATCTTCGATTCGATCCGAAGGGTTTCGCAGCCTCGCCGAGGGTTACATAATGGTTGTTGGTATGAAAGAATTTGAAGGAAATCTGACCAATGATGTGGAGTTCGTTGATATTATTTTATTTCGATATCAATTCGCACTGAATAATTTAAGGGATATAGCACTGCCGGTTTCTGAAAAGGTTTAA 282 0.422 MSRVCGKVKWFNDQKGFGFITPDDGGEELFVHQSSIRSEGFRSLAEGYIMVVGMKEFEGNLTNDVEFVDIILFRYQFALNNLRDIALPVSEKV* 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0952 93 SUPERFAMILY Nucleic acid-binding proteins 3 51 IPR012340 -
Amo13g0952 93 Pfam 'Cold-shock' DNA-binding domain 6 47 IPR002059 GO:0003676
Amo13g0952 93 ProSiteProfiles Cold-shock (CSD) domain profile. 3 72 IPR002059 GO:0003676
Amo13g0952 93 PANTHER COLD SHOCK PROTEIN 2 2 48 - -
Amo13g0952 93 PRINTS Cold shock protein signature 6 21 IPR002059 GO:0003676
Amo13g0952 93 PRINTS Cold shock protein signature 27 36 IPR002059 GO:0003676
Amo13g0952 93 ProSitePatterns Cold-shock (CSD) domain signature. 17 36 IPR019844 -
Amo13g0952 93 Gene3D - 5 46 IPR012340 -
Amo13g0952 93 SMART csp_8 5 71 IPR011129 GO:0003676
Amo13g0952 93 CDD CSP_CDS 6 47 IPR002059 GO:0003676
Amo13g0952 93 PANTHER COLD SHOCK DOMAIN PROTEIN 2 2 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0952 Amo-Chr13 11816337 11818328 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Amo13g0952 CSD 2.3e-19 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0952 - K09250 adu:107476544 102.064