Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0934 ATGATGGCTTCGGCGTTCGTCAAGCTCGATGATTCTCCAATGTTCCAGAAGCAGGTATTGTCTCTTGAAGCAAATGCTGATGAGTTAAAGGATCGGTGCCAGAAGCTGTTCAAAGGATGTAAGAAGTTTATGACAGCTTTGGGGGAAGCATATAATGGAGAAATTGGCTTTGCTGATTCATTAGAAATATTTGGCGGTGGCCTGGATGACCCTGTTAGTGTGTCAATTGGAGGACCGGTCATATCTAGATTTGTTACTACATTACGTGAGCTAGCTACTTTTAAAGAGCTTCTTCGTTCGCAGGTTGAACATGTGATGATTGACCGGCTCGCGGAGTTTATGAATGTTGATTTGCAAGAGGCAAAGGATTCTCGGAAACGTTTTGACAAAGCTATGCATTCTTACGATCAGTCACGAGAAAAATTTGTATCTTTGAAGAAAAATACGCCGGAAGACGTTGTTGCTGAATTAGAAGAGGATCTACAAAATTCGAAGTCAGCATTTGAAAAAAGTCGCTTCAATCTAGTACACTCTCTCATGAATATCGAAGTGAAAAAGAAGTATGAGTTCTTGGAGTCCATTAGTGCGATCATGGATGCTCATCTAAGATACTTTAAGCTGGGCTATGAGTTATTGAGCCAAATGGAACCGTATATTCACCAGGTGTTAACATGTGCACAACAATCTAAAGAACTGGCTAATATTGAACAAGATAAGCTTGCAAAACGAATCCAAGAATACAGAACACAGGCCGAGTTGGAAAGCACACGAGCTTCTAACAACACGGAACCCTTGCCAGGTGCTGATGGCACACATGTTGTAGGTTTGAACACTTACAAAGGCTTTGAAGGAGGGATGCAGCCTGCGGCCAAAGGGGAGGTTCAAACAGTTAAACAGGGCTATCTATTAAAACGCTCTTCAAGCTCACGAGGAGATTGGAAACGGAGGTTCTTTGTACTTGATAACCAGGGGAGTTTATTTTATTACAGCATGAAGGGACCCAAACCCAAGGGTGCTCAGTCATATAATTATAATCGTCCTCCTGAACAAAATAGTGGCATGTTTGGTAGATTTCGATCAAGGCACAACAGGTCATCATCACAAAATGAGGATGCTTTGGGTTGTTGTTCAATTGATCTGTGCACATCCTCTATAAAGATGGATGCAGAGGATACAGATCTACGTCTTTGCTTCCGTATAATTTCTCCCTCAAAAACATATACACTGCAGGCAGAAAATGAAGCTGATAGGATGGACTGGGTAAACAAAATTACCGGGGCTGTCACGTCGCTCTTTAATTCTCACTTTCTTCAACAGCCTCGTTATGATAGAGAAAATAGAAACTCAGCAACTGGTGCTTCGTCAACTAGTCAATCAGAGGATGGTGACAAATATTTGATGGATGACATATATCCAAAGGAAGTCCATAGTGTCTCTAAGATTTTAAGGGGAATTCCTGGGAATGATAAATGTGCTGAATGCAGTGCTGCTGATCCGGACTGGGCATCTTTAAACCTTGGCATATTACTCTGTATAGAATGCTCTGGAGTGCATCGAAATCTTGGAGTTCATATCTCGAAGGTGAGATCTATAACATTAGATGTTAAGGTATGGGAGCCTACTATTTTGGATTTATTTGATAAGTTGGGTAATGCTTATTGTAATTCGATATGGGAAGGCATGCTTCTACTTGGTAATGAAAGAGTAGGTGAATCAAATGGGCCAGCAAAACCATGTTTCATGGATGCCTTCCAAGATAAGGAAAAGTACATACAGGCAAAGTATGTACAGAAATCATTAATTATCAGAGAAGAGGATGTTCCCGGGAATCCTTCAGTTTCTGTAAGAATCTGGCTAGCGGTTCAAGCTATGGATGTACGAGAAGTATATCGCCTTATTGTAATCTCAAACTCAAATGTAGTAAATACGAAATATGATGATGCGGTTTCCCATGCTGATGCTAAAGCCCTGGACTTAGAATGTATTATATTGGAAGGCCATGAGCAGGATTCTGAATCTTGCCTCAGCATTAAACAGACTAATGAGACACAGAAGTGTTTCCATGGTTGGTCATTATTACATCTAGCATGTCATTCTGAACATGCACTAATGGTTGAGTTGTTACTTCAATTTGCTGCTGATGTAAACATGCAAGACTATCATGGTAGAACACCCTTGCACCATTGCATCACCGGTGGAAAAAATTCACTGGCGAAGTTTCTGTTGAGAAGGGGTGCTAGACCGTCAGTTAAAGATGCCGGCGGACTCACTGTACTTGAAAGAGCAATGGAGATGGGGGCAATAACCGACGAAGAACTATTCATCATGCTTGCTGAACACCAGTAA 2346 0.413 MMASAFVKLDDSPMFQKQVLSLEANADELKDRCQKLFKGCKKFMTALGEAYNGEIGFADSLEIFGGGLDDPVSVSIGGPVISRFVTTLRELATFKELLRSQVEHVMIDRLAEFMNVDLQEAKDSRKRFDKAMHSYDQSREKFVSLKKNTPEDVVAELEEDLQNSKSAFEKSRFNLVHSLMNIEVKKKYEFLESISAIMDAHLRYFKLGYELLSQMEPYIHQVLTCAQQSKELANIEQDKLAKRIQEYRTQAELESTRASNNTEPLPGADGTHVVGLNTYKGFEGGMQPAAKGEVQTVKQGYLLKRSSSSRGDWKRRFFVLDNQGSLFYYSMKGPKPKGAQSYNYNRPPEQNSGMFGRFRSRHNRSSSQNEDALGCCSIDLCTSSIKMDAEDTDLRLCFRIISPSKTYTLQAENEADRMDWVNKITGAVTSLFNSHFLQQPRYDRENRNSATGASSTSQSEDGDKYLMDDIYPKEVHSVSKILRGIPGNDKCAECSAADPDWASLNLGILLCIECSGVHRNLGVHISKVRSITLDVKVWEPTILDLFDKLGNAYCNSIWEGMLLLGNERVGESNGPAKPCFMDAFQDKEKYIQAKYVQKSLIIREEDVPGNPSVSVRIWLAVQAMDVREVYRLIVISNSNVVNTKYDDAVSHADAKALDLECIILEGHEQDSESCLSIKQTNETQKCFHGWSLLHLACHSEHALMVELLLQFAADVNMQDYHGRTPLHHCITGGKNSLAKFLLRRGARPSVKDAGGLTVLERAMEMGAITDEELFIMLAEHQ* 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0934 781 CDD BAR_SFC_plant 17 218 IPR035670 -
Amo13g0934 781 Pfam Putative GTPase activating protein for Arf 479 600 IPR001164 GO:0005096
Amo13g0934 781 ProSiteProfiles ARF GTPase-activating proteins domain profile. 476 608 IPR001164 GO:0005096
Amo13g0934 781 SMART ANK_2a 688 717 IPR002110 GO:0005515
Amo13g0934 781 SMART ANK_2a 721 750 IPR002110 GO:0005515
Amo13g0934 781 ProSiteProfiles Ankyrin repeat region circular profile. 721 752 - -
Amo13g0934 781 SUPERFAMILY PH domain-like 295 428 - -
Amo13g0934 781 SMART PH_update 296 431 IPR001849 -
Amo13g0934 781 SMART arf_gap_3 476 608 IPR001164 GO:0005096
Amo13g0934 781 Gene3D Arfaptin homology (AH) domain/BAR domain 8 253 IPR027267 -
Amo13g0934 781 MobiDBLite consensus disorder prediction 443 461 - -
Amo13g0934 781 Gene3D - 621 774 IPR036770 -
Amo13g0934 781 PANTHER CENTAURIN/ARF 4 777 IPR045258 GO:0005096
Amo13g0934 781 Gene3D Arf GTPase activating protein 466 608 IPR038508 -
Amo13g0934 781 Pfam PH domain 297 427 IPR001849 -
Amo13g0934 781 Coils Coil 230 250 - -
Amo13g0934 781 MobiDBLite consensus disorder prediction 251 266 - -
Amo13g0934 781 SUPERFAMILY ArfGap/RecO-like zinc finger 478 601 IPR037278 -
Amo13g0934 781 CDD ArfGap 480 595 - -
Amo13g0934 781 SUPERFAMILY BAR/IMD domain-like 9 318 IPR027267 -
Amo13g0934 781 CDD PH_ACAP 298 433 - -
Amo13g0934 781 Pfam BAR domain of APPL family 9 231 - -
Amo13g0934 781 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD2 4 777 - -
Amo13g0934 781 ProSiteProfiles Ankyrin repeat region circular profile. 688 719 - -
Amo13g0934 781 ProSiteProfiles PH domain profile. 295 429 IPR001849 -
Amo13g0934 781 ProSiteProfiles Ankyrin repeat profile. 721 753 IPR002110 GO:0005515
Amo13g0934 781 Pfam Ankyrin repeats (3 copies) 681 752 IPR002110 GO:0005515
Amo13g0934 781 PRINTS HIV Rev interacting protein signature 488 507 IPR001164 GO:0005096
Amo13g0934 781 PRINTS HIV Rev interacting protein signature 507 524 IPR001164 GO:0005096
Amo13g0934 781 PRINTS HIV Rev interacting protein signature 530 551 IPR001164 GO:0005096
Amo13g0934 781 ProSiteProfiles Ankyrin repeat profile. 688 720 IPR002110 GO:0005515
Amo13g0934 781 MobiDBLite consensus disorder prediction 251 270 - -
Amo13g0934 781 MobiDBLite consensus disorder prediction 443 464 - -
Amo13g0934 781 SMART 5bar 1 221 IPR004148 GO:0005515|GO:0005737
Amo13g0934 781 Gene3D - 289 441 IPR011993 -
Amo13g0934 781 SUPERFAMILY Ankyrin repeat 638 776 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0934 Amo-Chr13 11431264 11440959 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0934 488 595 C2H2 Transcription Factor Family AT4G21160 41.818 1.39e-18 86.3