Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0909 ATGCTTCTGGACAAGAATGTCATTCATGAAACGCATTATAAGGTTCTCAATGTCAAGGAAGATTCAAGTTATGAAGAAATCCGTGCTAGTTACCGCTCCGCCATACTCAGTTTGCATCCTGATAAGCTATTGAAATCTTCTGATGCATCCGGCAGCAATCAAACTAGTGGAGATAGATTTCTCAAAGTACAAAAGGCGTGGGAAGTTCTTGGCGATTCAAGCTCTCGTTTATTTTATGATAGTGAGCTCCGAAGTTCAAGGCGTGATGTCTCAGCTGTTGATGTTGCAGAAGATTTAAGCTTAGAGGATATGATGAATGAAGATGACGGAGAAGCATTGGAACTGTTTTATCAGTGCAGATGTGGAGATTACTTCTCTATAGACTCATTGGAATTGCAGAAAATGGGGTATTCCTTGTTGAGGGATGAAAGTAGAATATCTATATTGAACAATGATTCTTTGCCAGGATCAGTAATTCTTCCCTGTGGATCATGTTCTCTAAAAGCTCGTCTGGTAATCAATATGGATGAACACTGA 537 0.3966 MLLDKNVIHETHYKVLNVKEDSSYEEIRASYRSAILSLHPDKLLKSSDASGSNQTSGDRFLKVQKAWEVLGDSSSRLFYDSELRSSRRDVSAVDVAEDLSLEDMMNEDDGEALELFYQCRCGDYFSIDSLELQKMGYSLLRDESRISILNNDSLPGSVILPCGSCSLKARLVINMDEH* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0909 178 SUPERFAMILY CSL zinc finger 96 177 IPR036671 -
Amo13g0909 178 SMART dnaj_3 10 75 IPR001623 -
Amo13g0909 178 Gene3D DnaJ domain 2 87 IPR036869 -
Amo13g0909 178 PANTHER DIPHTHAMIDE BIOSYNTHESIS PROTEIN 4 1 176 - -
Amo13g0909 178 Pfam CSL zinc finger 99 172 IPR007872 -
Amo13g0909 178 ProSiteProfiles dnaJ domain profile. 11 83 IPR001623 -
Amo13g0909 178 PANTHER DPH3 HOMOLOG-RELATED 1 176 IPR044248 GO:0017183|GO:0046872
Amo13g0909 178 CDD DnaJ 11 72 IPR001623 -
Amo13g0909 178 Pfam DnaJ domain 11 80 IPR001623 -
Amo13g0909 178 Gene3D DPH Zinc finger 88 178 IPR036671 -
Amo13g0909 178 PRINTS DnaJ domain signature 13 31 IPR001623 -
Amo13g0909 178 PRINTS DnaJ domain signature 31 46 IPR001623 -
Amo13g0909 178 PRINTS DnaJ domain signature 55 75 IPR001623 -
Amo13g0909 178 ProSiteProfiles DPH-type metal-binding (MB) domain profile. 95 174 IPR007872 -
Amo13g0909 178 SUPERFAMILY Chaperone J-domain 10 83 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0909 Amo-Chr13 11164021 11164557 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0909 12 81 C2H2 Transcription Factor Family AT1G74250 44.286 1.84e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0909 K17867 - gmx:100814856 284.648