Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0901 ATGTCGCGCCAAACGGCGTCGACGGCATTCACTAAATCCAAGACTCTCGACAACAAATATATGCTGGGAGATGAGATTGGGAAAGGAGCTTATGGTCGAGTTTACAAAGGTTTGGACCTGGAGAATGGAGACTTTGTTGCAATTAAACAAGTCTCTTTGGAGAATATTGCACAGGAGGATCTCAACATCATCATGCAAGAGATTGATTTGTTGAAGAATTTGAACCACAAAAACATTGTAAAGTATCTTGGATCCTTAAAGACGAAGAGTCACCTGCACATAATTCTAGAGTATGTGGAGAATGGTTCACTTGCAAATATAATCAAGCCAAATAAATTTGGTCCTTTTCCAGAATCACTGGTTGCTGTTTATATTGCCCAGGTGTTGGAAGGCTTGGTTTATCTACATGAACAAGGTGTTATTCATCGAGATATCAAGGGTGCAAACATATTGACAACTAAAGAGGGTCTTGTCAAGCTTGCTGATTTTGGTGTTGCGACAAAATTAACAGAGGCTGATGTCAATACACATTCAGTTGTTGGAACACCATACTGGATGGCCCCAGAGGTTATAGAAATGTCTGGGGTTTGTGCTGCTTCTGACATTTGGAGTGTTGGTGTACAGTTATTGAACTTCTTACATGTGTACCTCCGTATTATGATTTGCAGCCTATGCCAGCTCTTTTTCGTATTGTCCAGGATGAGCATCCTCCAATTCCTGATAGCTTGTCACCTGACATTACCGATTTTCTGCATCAATGCTTTAAGAAGGATGCTAGACAAAGGCCTGATGCTAAAACACTGCTGTCTCACCCTTGGATTCAAAACTGTAGACGTGTCCTGCAGTCTTCACTCCGTCATAGTGGAACATTGA 873 0.4147 MSRQTASTAFTKSKTLDNKYMLGDEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIAQEDLNIIMQEIDLLKNLNHKNIVKYLGSLKTKSHLHIILEYVENGSLANIIKPNKFGPFPESLVAVYIAQVLEGLVYLHEQGVIHRDIKGANILTTKEGLVKLADFGVATKLTEADVNTHSVVGTPYWMAPEVIEMSGVCAASDIWSVGVQLLNFLHVYLRIMICSLCQLFFVLSRMSILQFLIACHLTLPIFCINALRRMLDKGLMLKHCCLTLGFKTVDVSCSLHSVIVEH* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0901 290 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Amo13g0901 290 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Amo13g0901 290 SMART serkin_6 20 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g0901 290 Pfam Protein kinase domain 21 213 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g0901 290 PANTHER MAP3K EPSILON PROTEIN KINASE 1 7 206 - -
Amo13g0901 290 Gene3D Transferase(Phosphotransferase) domain 1 17 261 - -
Amo13g0901 290 ProSiteProfiles Protein kinase domain profile. 20 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g0901 290 SUPERFAMILY Protein kinase-like (PK-like) 17 262 IPR011009 -
Amo13g0901 290 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 7 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0901 Amo-Chr13 11102481 11107589 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0901 1 213 MAP Kinase Kinase Kinase AT3G13530 92.019 7.30e-134 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE-Pl Amo13g0901 Pkinase 1.9e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0901 - - aprc:113864564 404.831