Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0898 AAGGTAACTGTGCTGCAGAATAGTAGGAGTTGGGGGAAGACAATAATCTCAATGTACTTGAGGAGAATACAGTGTAGGGACCGGAGATGGGCTTTCGTATTGCAGCCATCAAAATACTCTTTTAGTCCAAGATTCTCAGATCATGCAAACTTGCAATCTTTTTCCTCCAAGACCACTGTGAGAGCATATGCTTCTCATGGTAGTTTCTTGAGAAGACATCTTTTAGGTTCAGATTCATATAGCTTTGCTTCATATAGAAATAATTGTATTGGTCTGGACAAAAGGACTAGTTTATGTATAAGTACTCAGTTACGTGCATATAGTTCTGAAAGTGATGGAAGAAATGCAAGTGAGGATAAGCATGTGCACGTTAAAGATGGAGCTAACATTGATAAAGGGAAAAATCAGAAAGAGAAGTTTGACAAAGATGTCAAGTATTGCAATGAGCATGCACGACTTGGCGAGCAGGATCAAGCGGAATGGCTTCATAATGAGAAACTTGGAATAGAAAGTAAGAAGAAAGAATCACCATTTTTGACAAGAAGGGATAAGTTCAGAAATGAGTTTCTAAGAAGAATTGTTCCTTGGGAGAAAATAAACATTTCATGGGACACATTTCCTTATCATGTCAATGAGCACACCAAGAATCTACTGGTGGAATGTACTGCTTCACATTTGAGACATAATTCATTCGCTTCATCTTTTGGTGTTCGTCTCACATCTTCAAGTGGGAGGATATTGCTTCAGAGTGTTCCTGGCACTGAACTCTATCGTGAGAGGCTAGTTAAAGCTCTTGCACATGATTTACAAGTTCCATTATTAGTTCTTGATAGTAGCATCCTTGCTCCTTATGACATTGATGATGAATTATCATCAGACTATGAGTCTGAAGATGATAATGCAGACTCCGGGGCAGAGGGCTCTTTGGAGTTAAAGCAGCTGTTCAGAAACTTGTTCCTTACAACATTGAAGAATTTGAAAAGGTCTAATGAAGCCAATTCTTCTGGTAAATCTGGGTGCCAGATAAGAAAAGGTGACCGAGTGAAGTACATTGGACCATCTACTCGAGCTACAATTGATGATAGGATCAGATTGGGGAAGATACTGACATCTGATGGGTCAACTAGTGCTTATACTGTTATACATGGCAGGCCTTTAACCACTGGTCAGAGAGGAGAGGTATATGAAGTAAGCGGAGATCAAGTTGCTGTCATAATGGATATTAATGAAGATCGTGGCAATGAGGGTGGGGCAGAGAATCTTAGTAGTGACCATCATACAAAACCACCGATTCGTTGGCTACATGTTAAGGACATTGAGAATGATCTTGATGCTCAAGCACTAGATTGCTATATAGCACTGGAGGCTTTATGTGAGGTTTTGCATTCGAAACAACCGCTCATTGTCTACTTTCCAGATGGTTCACAGTGGTTGCATAAATCAGTTCCTAAGTCAAACCGTAATGAGTTTTTTAACAAGGTTGAAGAGCTGTTTGACCGGTTATCTGGCCCCGTTGTGTTGATCTGTGGGCAAAACAAAGTTCAATCAGGATCAAAGGAGAAAGAACAATTTACAATGATACTTCCAAACTTTGGACGAGTTGCTAAGCTGCCTCTTTCTCTGAAGCGTTTGACTGAGGGATTCAGAGGTGCAAAGAGATCAGAAGATGATGAAATTCACAAGCTCTTTTCTAATGTTTTGTGCGTACACCCACCTAAGGATGAAAATGTGCTGGTAACATTTAAGAAACAACTTGAAGAAGACAGGAAAATTGTCGTTTCAAGAAGTAATTTGAATGAATTAAGGAAGGTTCTCGAAGAACATCAGCTGTCATGTGTGGATCTATTGCATGTAAACACTGATGGTGTTATTTTGACAAAGCAAAAAGCTGAAAAAGTTATTGGGTGGTCGAAAAACCATTACTTATCATCATGTCTGCTCCCTTCTGTGAAAGGAGAACGGTTGTGCATCCCTCGTGAAAGTCTTGAGATTGCAATCTCAAGGTTGAAGGGCCAGGAAAATATATCACAGAAGCCTTCCCAAAACCTTAAGAACCTTGCGAAGGATGAGTTTGAGAGCAATTTCATTTCAGCTGTGGTACCCCCTGGTGAAATTGGGGTGAAGTTTGATGATATAGGTGCTCTTGAAAACGTGAAGAAGGCACTTAATGAACTTGTTATTCTTCCGATGAGAAGACCAGAACTCTTCTCTCGTGGTAACTTGTTGCGGCCTTGCAAAGGAATATTACTTTTTGGTCCTCCTGGAACTGGAAAAACACTTCTGGCCAAAGCACTTGCAACTGAAGCTGGTGCAAATTTTATTAGCATAACTGGTTCAACTCTTACTTCAAAGTGGTTTGGAGATGCAGAAAAACTAACAAAAGCTCTTTTCTCCTTTGCTAGCAAGCTTTCTCCTGTCATTATATTTGTTGATGAAGTTGACAGTTTGCTTGGTGCTCGTGGTGGTGCTTTTGAGCATGAAGCCACTAGGAGGATGAGGAATGAGTTCATGGCAGCTTGGGATGGATTGAGATCAAAAGAAAATCAAAGAATCCTCATTCTTGGTGCAACAAACCGGCCATTTGACCTTGACGATGCTGTCATTCGTCGCTTACCAAGAAGGATATATGTTGATTTACCTGATGCCGAAAATCGAATGAAGATTTTGAGAATATTTCTTGCACAAGAGAATTTGGATCCTAATTTTGAGTATGACAAACTTGCTAACTTGACTGAAGGATACTCTGGCAGTGATTTGAAGAACCTTTGTGTTGCTGCAGCATACAGACCTGTTCAAGAGCTCATAGAGGAAGAAAACATTGCACAGGGAGGGACTAATAGTACAACTACAGTATTAAGGCCTCTTAATTTGGATGATTTTATTCAGTCAAAATCCAAGGTGGGTCCGTCGGTGGCATACGATGCAACAAGTATGAATGAGCTGAGGAAGTGGAATGAAATGTATGGTGAAGGTGGTAGTAGGACTAAAGCATCATTCGGATTTTGA 3006 0.4029 KVTVLQNSRSWGKTIISMYLRRIQCRDRRWAFVLQPSKYSFSPRFSDHANLQSFSSKTTVRAYASHGSFLRRHLLGSDSYSFASYRNNCIGLDKRTSLCISTQLRAYSSESDGRNASEDKHVHVKDGANIDKGKNQKEKFDKDVKYCNEHARLGEQDQAEWLHNEKLGIESKKKESPFLTRRDKFRNEFLRRIVPWEKINISWDTFPYHVNEHTKNLLVECTASHLRHNSFASSFGVRLTSSSGRILLQSVPGTELYRERLVKALAHDLQVPLLVLDSSILAPYDIDDELSSDYESEDDNADSGAEGSLELKQLFRNLFLTTLKNLKRSNEANSSGKSGCQIRKGDRVKYIGPSTRATIDDRIRLGKILTSDGSTSAYTVIHGRPLTTGQRGEVYEVSGDQVAVIMDINEDRGNEGGAENLSSDHHTKPPIRWLHVKDIENDLDAQALDCYIALEALCEVLHSKQPLIVYFPDGSQWLHKSVPKSNRNEFFNKVEELFDRLSGPVVLICGQNKVQSGSKEKEQFTMILPNFGRVAKLPLSLKRLTEGFRGAKRSEDDEIHKLFSNVLCVHPPKDENVLVTFKKQLEEDRKIVVSRSNLNELRKVLEEHQLSCVDLLHVNTDGVILTKQKAEKVIGWSKNHYLSSCLLPSVKGERLCIPRESLEIAISRLKGQENISQKPSQNLKNLAKDEFESNFISAVVPPGEIGVKFDDIGALENVKKALNELVILPMRRPELFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLSPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMAAWDGLRSKENQRILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAQENLDPNFEYDKLANLTEGYSGSDLKNLCVAAAYRPVQELIEEENIAQGGTNSTTTVLRPLNLDDFIQSKSKVGPSVAYDATSMNELRKWNEMYGEGGSRTKASFGF* 1002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0898 1001 ProSitePatterns AAA-protein family signature. 851 870 IPR003960 GO:0005524|GO:0016887
Amo13g0898 1001 CDD AAA 746 879 - -
Amo13g0898 1001 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 18 300 - -
Amo13g0898 1001 Pfam ATPase family associated with various cellular activities (AAA) 748 878 IPR003959 GO:0005524|GO:0016887
Amo13g0898 1001 Gene3D - 706 974 IPR027417 -
Amo13g0898 1001 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 18 300 - -
Amo13g0898 1001 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 333 1001 - -
Amo13g0898 1001 Gene3D - 880 965 - -
Amo13g0898 1001 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 333 1001 - -
Amo13g0898 1001 SMART AAA_5 744 881 IPR003593 -
Amo13g0898 1001 Pfam AAA+ lid domain 902 937 IPR041569 -
Amo13g0898 1001 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 706 928 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0898 Amo-Chr13 11082083 11091145 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0898 707 957 Calmodulin-binding Proteins AT3G56690 35.433 3.54e-40 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0898 - - gmx:100802939 1542.32