LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo13g0895	ATGGCAGCGACATTGCCTTCGAACATCTTGCCATCCCCTTCGAGTCCTGATTGGTTGAATAAAGCCGACAATGCGTGGCAACTCGTCGCGGCAACACTCGTCGGCCTTCAAAGTGTTCCTGGACTCATAATCTTGTATGGAGGAGCAGTGAAGAAAAAATGGGCAGTGAACTCAGCGTTCATGTGCTTGTATGCATTTGCATGTGTCTTCTTCTGTTGGATTGTATGGGGTTATAGAATGTCCTTTGGTGATAAGCTTGCACCATTTTGGGGTAAAGCTGCGGTTGCACTTGATGAAAAGTACCTTTTTGACCCTGCATTTTCAGGGATGTTCCCAAATGCAACAATGGTGTATTTCCAGGGTGTGTTTGCAGCCATAACATTGATTTTGATAGCTGGTGCTTTGTTGGGAAGAATGAACTTTTATGCATGGATGGCTTTTGTGCCTCTTTGGCTCACTTTCTCATACACCTTCACTGCATTCAGTATATGGAGTCCAAATGGGTTCTTGTTCAAGCTTGGGATAATTGATTACTCTGGTGGATATGTTATTCATTTGTCTTCTGGTGTTGCTGGATTCACTGCTGCTTATTGGGTTGGACCACGTCTTAACAAGGATAGAGAAAGGTTTCCTCCAAACAACATCCTACTGATGTTGGCTGGGGCTGGTTTACTCTGGATGGGGTGGACCGGCTTCAATGGCGGCGACCCCTACTCAGTAGGCCTGGATTCCTCCCTGGCTGTGTTGAACACTCATGCTTGCACTGCCACCAGCTTGCTCACTTGGGTCATTCTTGATGTCATCTTCTTCCGCAAACCCTCCGTCATTGGTGCTGTTCAAGGCATGATCACCGGCTTGGTCTGCATTACCCCTGCCGCAGGAGTTGTGCAAGGATGGGCAGCAATTCTAATGGGGATGCTATCAGGCTCAATTCCATGGTTCACAATGATGGTAGTTCACAAGAGATCAAAGCTTCTCCAAAAGGTGGATGACACAATGGCAGTGTTGCACACTCATGCCATTGCAGGAACCCTTGGAGGAGTCCTTTCAGGCCTATTTGCTGTGCCAAAGCTCAACTTCTTGTTCTATGGTTCTTACAACAAATATGTTGGACTCTTCTATGGCCTCAAAATGGGAATGAGCAAAACAGGGTTTAGACAAATATGGATTCAGTTGGTTGGGATTTTCTTTGTCGTCACATTGAATGTCATTAGCACAAGCTTGATATGCCTGTTGATTAGGATGTTTATTCCTCTGAGGATGTCTGAGGAAGACATGGAGATTGGTGATGAAGCTGCTCATGGTGAAGAGGCTTATGCTATATGGGGTCAAGGTGATAAGCTTGAGAATGCAAGCTCTAAGTATGCAAGTTCAATGTATGATGATGTTGAAGGAGCCACCAATAAGAAAAAGCGTAGTGGCCAAGTTGAGATGATGTAG	1440	0.4556	MAATLPSNILPSPSSPDWLNKADNAWQLVAATLVGLQSVPGLIILYGGAVKKKWAVNSAFMCLYAFACVFFCWIVWGYRMSFGDKLAPFWGKAAVALDEKYLFDPAFSGMFPNATMVYFQGVFAAITLILIAGALLGRMNFYAWMAFVPLWLTFSYTFTAFSIWSPNGFLFKLGIIDYSGGYVIHLSSGVAGFTAAYWVGPRLNKDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYSVGLDSSLAVLNTHACTATSLLTWVILDVIFFRKPSVIGAVQGMITGLVCITPAAGVVQGWAAILMGMLSGSIPWFTMMVVHKRSKLLQKVDDTMAVLHTHAIAGTLGGVLSGLFAVPKLNFLFYGSYNKYVGLFYGLKMGMSKTGFRQIWIQLVGIFFVVTLNVISTSLICLLIRMFIPLRMSEEDMEIGDEAAHGEEAYAIWGQGDKLENASSKYASSMYDDVEGATNKKKRSGQVEMM*	480

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo13g0895	479	Gene3D	Ammonium transporter AmtB like domains	11	443	IPR029020	-
	Amo13g0895	479	ProSitePatterns	Ammonium transporters signature.	177	202	IPR018047	GO:0008519\|GO:0016020\|GO:0072488
	Amo13g0895	479	PRINTS	Rhesus blood group protein signature	247	269	IPR002229	GO:0005887
	Amo13g0895	479	PRINTS	Rhesus blood group protein signature	216	234	IPR002229	GO:0005887
	Amo13g0895	479	PRINTS	Rhesus blood group protein signature	120	136	IPR002229	GO:0005887
	Amo13g0895	479	PRINTS	Rhesus blood group protein signature	340	356	IPR002229	GO:0005887
	Amo13g0895	479	SUPERFAMILY	Ammonium transporter	18	421	-	-
	Amo13g0895	479	TIGRFAM	amt: ammonium transporter	23	439	IPR001905	GO:0008519\|GO:0016020\|GO:0072488
	Amo13g0895	479	Pfam	Ammonium Transporter Family	25	439	IPR024041	GO:0008519\|GO:0016020\|GO:0072488
	Amo13g0895	479	PANTHER	AMMONIUM TRANSPORTER	4	479	-	-
	Amo13g0895	479	PANTHER	AMMONIUM TRANSPORTER MEP2	4	479	IPR001905	GO:0008519\|GO:0016020\|GO:0072488

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo13g0895	Amo-Chr13	11035862	11038977	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo13g0895	114	466	Inorganic Solute Cotransporters	AT2G38290	62.323	4.60e-146	420

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo13g0895	K03320		-	gmx:100787856	808.905