Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0894 ATGGCCAAGACTAGCAAGAAATCAGCTTCCAAAGTTGAGACTGCTCCACCTGTCAAAAAGGGAAAGAGGCAGGCAGATGAGGAACTTGAGAAGCAAAAACCTGCTACCAAAGTTGCTGTTGCTTCAAAGAAGAAGCCTGCTAAGAACGGCACTTTAAGCTCCCCTGCAAAGAAAGCCAAGCCAGCTAGTAGTTCTAGCTCTGATGATTCTGCTTCAGAGTCTGAAGATGAGAAACCTGCAGCAAAGGCTCCTCCAAAAAGTCAGGCTGCAAAAAATGTTGCTCCAGCTAAGAAAGTCAAGCCAGCTTCCTCTTCAAGTTCTGAATCGTCAGATGATGACTCCGATGAGGATGAAGTGCCCAAATCCAAGGTGCTGCCTGCTGTGGTTAAGAATGGATCTGCTTCTGCAAAGAAACCAAGTGAAAGCTCCGAGTCTGAGGACAGCGGCTCTGAGGAGGAAAAGAAAGCAAAATCAACCAAAAAGGTGCCTGCTAAGAAGGTTGAAACAGAGTCATCCTCTGATAGTAGCTCTGATGAAGAAGATAAGAAAAAACCTGTAGCCAAATCATCTGCAGTTCCAAGTAAGAAAGTTGAGACAACTGAAAGTTCAGATGATGATTCAAGTGAAAGCTCTGATGAAGAAGAAAATGGTGCAAAACCGACTGCAAATGCGGCATCCAAGCCTTCTGCTATAGCTAAGAAGAATGATGACAGTGACAGTTCAGATTCTGATGATAGCAGCTCCAAAGATGAGAAGAAAACTGCTCCCAAGACTGTTTCCAATGCCAAGTCAGCACCTGAGCCAAAGCCTGCCAAGAAGTCTAGTAGTTCTAGTGAGAGTGAGTCGGATGAGGAAGAGGACTCATCTGATAGTGAATCTGAGGATGAAAAGAAAACTGCTAAAAGCTCCGGTCAGACTCACTTCTCTATAACAGGAAAAATGGATGTTGATGAAGAAGAGAGCTCTGATGAAAGTGATGACGAGCCAAAAAAGCCTGTGAAAGTTTCAAAAGAAAGCAGTGATAGTTCAGATGACAGTGATGAGGAAGAAGAGAAACCTTCTAAAACTCCTCAGAAAAGTGCTAAGGATGTGGAGATGGTTGATGCTGACTCAGCAAAGAAAGTTCCTAAAACCCCTTCTACACCTAGTGCTGCAACAGGTGGATCAAAGACACTATTTGTTGGAAATCTGTCATTTAGTGTGCAACGATCTGACGTTGAGGAGTTTTTCAAAGATTGTGGAGAAGTTGTTGATGTTCGTTTTTCTGTTGACGATACTGGGAGGTTTAAAGGATTTGGACATGTTGAGTTTGCTACTGCAGAGGCAGCACAAAGTGCTCTTGAATTGAATGAGCATGAGTTGTTGAATCGTCCTGTTAGGCTTGATTTAGCTCGTGAAAGAGGTTCATATACCCCTGGTGGCAGCAATTCCTTCCAGAAAGGTGGTCAGCGTCAAACTGGTCAAACTATATACATAAGGGGTTTTGATAAATCTCTTGGAGAAGAAGAGATAAGAGCTAGCCTAAATGAGCATTTTGGTTCGTGCGGGGAGATCTCGAGGGTGTCAATCCCAAAAGATTTCGAGTCTGGATGTCCTAAAGGTTTTGCCTACATCGACTTCAAGGATTCTTCTAGCATGAAGAAAGCTCTAGAACTCAATGAGACTGAACTTGCTGGTGGTTATTACCTCTCAGTTGAAGAAGCCAAACCTAGAGATGGCTTTGGTTCAGGTGGTGGAAGAGGTGGCGGTCGATTTGGAGGTAGGAGTAATGAAGGTGGTCGATTTGGAGGAAGGAGTGGTGGTGGCCGATTTGGTGGTGGAAGGGGTGGTAGTGATCGAGGCAGAGGTGGTCGAGGAAGAGGTGGTGGAAGGGGTTTTGGAAATAAACCGACATTTGCTGCAGAAGGAAAAAAGACCACATTTGCCGATGACGACTAG 1938 0.4453 MAKTSKKSASKVETAPPVKKGKRQADEELEKQKPATKVAVASKKKPAKNGTLSSPAKKAKPASSSSSDDSASESEDEKPAAKAPPKSQAAKNVAPAKKVKPASSSSSESSDDDSDEDEVPKSKVLPAVVKNGSASAKKPSESSESEDSGSEEEKKAKSTKKVPAKKVETESSSDSSSDEEDKKKPVAKSSAVPSKKVETTESSDDDSSESSDEEENGAKPTANAASKPSAIAKKNDDSDSSDSDDSSSKDEKKTAPKTVSNAKSAPEPKPAKKSSSSSESESDEEEDSSDSESEDEKKTAKSSGQTHFSITGKMDVDEEESSDESDDEPKKPVKVSKESSDSSDDSDEEEEKPSKTPQKSAKDVEMVDADSAKKVPKTPSTPSAATGGSKTLFVGNLSFSVQRSDVEEFFKDCGEVVDVRFSVDDTGRFKGFGHVEFATAEAAQSALELNEHELLNRPVRLDLARERGSYTPGGSNSFQKGGQRQTGQTIYIRGFDKSLGEEEIRASLNEHFGSCGEISRVSIPKDFESGCPKGFAYIDFKDSSSMKKALELNETELAGGYYLSVEEAKPRDGFGSGGGRGGGRFGGRSNEGGRFGGRSGGGRFGGGRGGSDRGRGGRGRGGGRGFGNKPTFAAEGKKTTFADDD* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0894 645 MobiDBLite consensus disorder prediction 376 391 - -
Amo13g0894 645 PANTHER BNAA08G02930D PROTEIN 267 639 - -
Amo13g0894 645 MobiDBLite consensus disorder prediction 232 257 - -
Amo13g0894 645 MobiDBLite consensus disorder prediction 140 188 - -
Amo13g0894 645 SUPERFAMILY RNA-binding domain, RBD 380 486 IPR035979 GO:0003676
Amo13g0894 645 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 392 459 IPR000504 GO:0003723
Amo13g0894 645 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 490 559 IPR000504 GO:0003723
Amo13g0894 645 MobiDBLite consensus disorder prediction 349 372 - -
Amo13g0894 645 MobiDBLite consensus disorder prediction 568 645 - -
Amo13g0894 645 Gene3D - 473 586 IPR012677 -
Amo13g0894 645 SUPERFAMILY RNA-binding domain, RBD 487 602 IPR035979 GO:0003676
Amo13g0894 645 CDD RRM1_NUCLs 391 467 IPR034349 -
Amo13g0894 645 MobiDBLite consensus disorder prediction 16 34 - -
Amo13g0894 645 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 390 466 IPR000504 GO:0003723
Amo13g0894 645 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 267 639 - -
Amo13g0894 645 MobiDBLite consensus disorder prediction 1 391 - -
Amo13g0894 645 Gene3D - 309 472 IPR012677 -
Amo13g0894 645 SMART rrm1_1 391 462 IPR000504 GO:0003723
Amo13g0894 645 SMART rrm1_1 489 566 IPR000504 GO:0003723
Amo13g0894 645 MobiDBLite consensus disorder prediction 326 341 - -
Amo13g0894 645 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 488 570 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0894 Amo-Chr13 11029706 11034767 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0894 371 567 Eukaryotic Initiation Factors Gene Family AT4G34110 28.846 9.77e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0894 K11294 - ahf:112789008 709.909