Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0890 ATGGCAAATCCAGGTGGAGAAATAGAAACTGGTTCTGAGACCATCAGCAACAGCAGCAGCAGTTACGATGTTTTTCTGAGTTTTAGGGGTGAAGACACGCGTTACGCCTTCACCGGTCATCTCTACTATGCCTTGTGCCGCAAGGGAATCAAAACCTTCATGGATAGCGAGGATCTGAGGGTGGGAGAAACGACTCGACCTCAACTCTTTCGGGCCATTGAAGAATCCAAGGTTTCAATCATTATTTTCTCCGAGAACTATGCAGATTCCACTTGGTGTCTTGATGAACTTGCCAAGATCCTCGAGTGTCAGGAGGAAAAGGGCCAGCTTGTGTTTCCCATATTCTACAAAATAGAGCCTTCAGATGTACGGCATCAGAGAAACAGTTATAGGCTTGCCATGGCTGCTCATGAAAATAAGTTTGGTTGTTACTCTGAGAAGGTGCAGAAGTGGAAGTCAGCCTTGCTTGGAGTATCTAACATAACAGGATATCATTTACAAGAAGGGTTCGAATTCAAGTTCATTCAAGATATTGTCTGCAAGGCCGCCACAAAAATTTCTCCTAAACAGATACCTGTGGAGGAGAGTGTAGTTGGACTGCAGTTTCGAGTTGCAGAACTGAAGTCACTCTTAGATATTGAGTCTAACAAGAACACTTTCATGTTGGGGATCATCGGAACTGGTGGAATTGGCAAAACAACACTCGCTAAGGTTTTCTATAACTCCATTTGCAATGAATATGAGGGTGCTTGTTTTATTTCCAATGTCAGAAAAGCTTCCAACCAAGACAAGGGGAGAATATTCCTGCAACAAAAGATCCTGTCAGATGCTCTTGGGGTGCAAAAGATCAAGTTGGACAGTGTTGAAAAAGGAATACATACAATAAAAGCCAATCTCAGCGCAAAAAAAGTTCTCATAGTTCTAGATGATGTTGATAAGATAGAACAGTTGAAAGAATTAGCAGGAGGATGTGACTGGTTTGGTCTTGGGAGCAGAATCATTGTAACAACAAGAGATAAACATTTGCTGGTATCTCACCAGATCAGAAGGATTTATGAAATGGAAATGATGAACGATCGAGAATCACTTGAGTTGTTTTGTCAGAATGCCTTCAAGATGAGTACTCCTGCTAGAAACTATGAAGACTTGTCGAATCGAGCAATACGTTATGGAAAAGGTCTTCCATTAGCTTTAAAAGTCATAGGCTCAGAATTGATTGGTAAAGATCTGCAAGTGTGGGAGTCTTCTTTGGACAAATATGAGAAGAATCCTCATGGAGATATCCAAAATATTCTTAGAATAAGTTATGACAGTCTTGAACGCAATGAAAAGGAAATTTTCCTTGACATTGCATGTTTTTTCAATGGGCAGAGATTGAAATATGTTAAAAGAATACTAGATGGCTGTGACTTTTACACAGACAGTGGTATTAAAATACTAGTTGATAAATCTCTCATAACCATTGAAAATGGTTACTTGAGGATGCATGATCTAACACAAGACATGGGTAGAGAGATTGTGAAGCAAGAAGCACCAAAAGAGTCTGGTGAACGCAGTAGGTTATGGCTTTGTAAAGATGTTCTTGAAGTACTAACTGAAAATAGGGTAAGAACTAAGAACATTACAGCTCTCTTTATTTGCTTTCTTTTTTGTTAG 1656 0.3986 MANPGGEIETGSETISNSSSSYDVFLSFRGEDTRYAFTGHLYYALCRKGIKTFMDSEDLRVGETTRPQLFRAIEESKVSIIIFSENYADSTWCLDELAKILECQEEKGQLVFPIFYKIEPSDVRHQRNSYRLAMAAHENKFGCYSEKVQKWKSALLGVSNITGYHLQEGFEFKFIQDIVCKAATKISPKQIPVEESVVGLQFRVAELKSLLDIESNKNTFMLGIIGTGGIGKTTLAKVFYNSICNEYEGACFISNVRKASNQDKGRIFLQQKILSDALGVQKIKLDSVEKGIHTIKANLSAKKVLIVLDDVDKIEQLKELAGGCDWFGLGSRIIVTTRDKHLLVSHQIRRIYEMEMMNDRESLELFCQNAFKMSTPARNYEDLSNRAIRYGKGLPLALKVIGSELIGKDLQVWESSLDKYEKNPHGDIQNILRISYDSLERNEKEIFLDIACFFNGQRLKYVKRILDGCDFYTDSGIKILVDKSLITIENGYLRMHDLTQDMGREIVKQEAPKESGERSRLWLCKDVLEVLTENRVRTKNITALFICFLFC* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0890 551 Pfam NB-ARC domain 204 439 IPR002182 GO:0043531
Amo13g0890 551 PRINTS Disease resistance protein signature 391 405 - -
Amo13g0890 551 PRINTS Disease resistance protein signature 298 312 - -
Amo13g0890 551 PRINTS Disease resistance protein signature 221 236 - -
Amo13g0890 551 SUPERFAMILY "Winged helix" DNA-binding domain 427 531 IPR036390 -
Amo13g0890 551 ProSiteProfiles TIR domain profile. 20 186 IPR000157 GO:0007165
Amo13g0890 551 Gene3D - 184 351 IPR027417 -
Amo13g0890 551 Gene3D - 20 183 IPR035897 -
Amo13g0890 551 SMART till_3 21 161 IPR000157 GO:0007165
Amo13g0890 551 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 538 IPR044974 GO:0006952
Amo13g0890 551 Gene3D - 356 440 IPR042197 -
Amo13g0890 551 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 20 538 - -
Amo13g0890 551 Pfam TIR domain 22 166 IPR000157 GO:0007165
Amo13g0890 551 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 450 IPR027417 -
Amo13g0890 551 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 164 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0890 Amo-Chr13 11006395 11008723 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0890 17 549 WRKY Transcription Factor Family AT4G12020 30.669 3.05e-61 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0890 - - ahf:112771910 1025.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0890 13 11006395 11008723 Amo13g0890 13 11006395 11008723 ECH