Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0889 ATGGCAAATCCAGCTTCAACTTCTGAGACCATTGCTACTAACTACGATGTATTTCTGAGTTTCAGGGGTGAAGACACGCGTCATGGATTCACAGGTCATCTCTATGATGCTCTCTGCCGCAACGGAATCAACACCTTCATCGATGATGAGAATCTCAGAACAGGAGAAACAATTCGACCTCAACTCCTTCATTCCATTGAAGCCTCAAAGATCTCCATTATTGTTTTCTCAACAAACTATGCAGCTTCAACATGGTGCCTTGATGAACTCGTCCAGATCCTTCGGTGTCACAGGGAAAGGAACCAACTTGTGTTTCCGGTCTTCTACAAAGTAGAGCCCTCAGATGTACGGCATCGGAGGAACACTTACAAGGAAGCCATGGATGCTCATGAAATCAGGTTTGGTTGTCATTCTCAGAAGGTGAAAGAATGGAAGGAAGCTTTAGCTGAAACATCCAACAGGAAAGGCTTTCATTTGAAACAAGGGTATGAATTCAAGTTTATTCAAGAAATTGTAGGCAAGGCATTGACTCATATACCTCCAAGACAATTACTTATTGAGGATCATATGGTTGGATTGCAAACTCGAGTTGTAGAAGTGAAGTCACATCTATATTCTTGGCACAGGAGATTATCCAGTAGCGAATCACCCAAAACAAAGTTCTATAATAACAATACCATGTTGGGGATTGTTGGAATTGGTGGGAGTGGAAAGACGACGCTTGCCAAAGCCTTGTATAACTCCATCTGCGACCAGTTTGAATGTGCTTGTTTTCTTTTCAATATTAGAAAAATTTCAGATCAAGAAGAGGGCCTAGTACTTCTACAGAAAATGCTCCTCTCAGAATTGCTTGGGGAGGAGAAAATCAAGGTCCGCAGTGTTGAGAAAGGAATCACTATGATCAAAGAGAGACTTAGGGAAAGAAAAGTTCTTATTGTTCTTGACGATGTTGATAAGACAGAACAATTAAAGGCATTGGCAGGAGAATGTGATTGGTTTAGTCAGGGGACTCGAATTGTTATAACAACAAGGGATAAATATCTTCTAACAGCTCATGAAATCGAAAAGATTTACGAGATGAAATTGCTAAGTGACCCTGAATCTCTACTGCTCTTCTGTTGGAACGCCTTCAAAATGACAAGGCCCAAAGCAAACTATGAAGACCTATCCAATCAAGCAATACATTATGCCCAGGGTCTCCCATTAGCCTTAAAGGTTATAGGGTCGAATTTGATTAATAAAAATTTAGAAGAGTGGAAGTCTGCTTTGGACAAATATGAGAAGAATCCTCCTAAAGACATTCAAAGTGTTCTTAGAGTAAGCTATGATAGTCTTGAAGGCAATGAAAAGGATATTTTTCTTGACATAGCATGCTTCTTCAATGGGAAGAAATGGGAATATGTAAAAAATGTATTAGATGGATGTGGTATGTTTACAGAAGATGGTATTAGAATACTAGTTGATAAATCTCTCGTAACTATCAAAGATGGTTATTTGAGGATGCATGATCTAATACAGAATATGGGTAGGGAGATTGTGAAGCAGGAGGCACCAAAAGAAGTTAGTGACCGCAGCAGATTATGGTTTCATGAAGATGTTCTTGAGCTACTACCCGATGATAAAGAAAATAAAAGAATTGAAGGAATAAAGCTTGTTCAATGTGAAGAACATAATTGGACTGACAATGCCTTTGAAAAGATGAAGAAACTTAGAATTCTCATTCTTCGGAACACAAACCTTTCATGTCGGATTATTCCTCTACCCGAGCAATTAAGGCTGCTTGATTGGAAGGGGTACCCTTCAAATTCTATTCCGTCGAACTTAAAAAAAATTGTTGCCTTCAGTTTACGTCATAGTCCTCTCATGTTGGAAAAGCCGTTTCAGAACTTTAAGCATTTGACTTACATGAATTTCTCCCATTGTGAATCCATCACTCATTTTCCTAATGTATCTGAAGCCCAAAGTTTAAGAAAATTGATACTCAATGGATGCATAAACTTGGTTAGGTTTGATGAATCAGTTGGATTTCTCCCAAACCTTACATATTTGAGAGCTTCAAAGTGCACTAAATTAAGAAAGTTTCTTTCAAGAATTTGTCTGCCTTCACTAGAGCACCTTTCCCTTAACTGGTGTAGAAGACTTGGACTCTTCCCAGACATAGTGGGAAAGATGGATAAGCCATTAAAGATTTGTTTGAAAGCTACCGCTATTCAAGAGCTTCCAGATTCCTTTGTTGATCTTGTAGGACTTCTCTATTTAGATTTGACAAGTTGCGAGAAACTTGGTTATCTTCCAAGCAGCTTATTTATGCTGCCAAATTTTGTCACACTGAAAGTTGGAGGATGCCCTCAACTTGGTGGATCATTTGCAAGATTCAGAGAAAGCCTTTCAACTACTGCAGAGAGCTGTCCAAGTTTAAAAACTCTGCATTTAAGCCATGCAAGTTTATGTGACGAAGATCTTCATGTAATTATGCAGAGTTTTCCAAACTTGGAAGTCTTAAATGTTTCATCAAACAACTTTGTATCTATTCCAGCATGCGTTCAAGAATCGTCCTACTTGACAAGTTTGGATTTGAGTTACTGCCTAAATCTTCAAGAAATTCCAGAACTTCCCTCTAGTGTTAGGAAAGTGGATGTGAGACACTGCAGTTCCTTAAGTGCAAACACAACAAATATGCTATGGGCACAGGTGCGCAAAGAGATACATAAATTACAAGTTGTGATGCCAACTTCCAATACTGAGATTCCAGAATGGTGGGACTATCATGGAAGTTGGCAGGGCTATCCACAGTACCTGAATTTCGAGGTACGTGGCAAGTTCCCTGTTGTGGCTTTGGCGTTTGTGTTTGGAGAAATGAACTATCAACCTGTTGGTCTGCACTTGTCCATTGACTCTAGAGATTACTCTGCATACCAACCATCGCATAATTTCACAGTTGCCGAAAATCATGTGTTGTTGTGTGACCTACGAGTATTGTTCAGTGATGAGGGGTGGAAGAGACTTGATGCACATGCTGAGCATGGTAACAAATGGAAAACAGTGAAGGTGAAGTGTGTACCAGACATCATCCCAGTTCAATGGGGAGTGTATGTTTACAAGGAAGAAACAAGCATGAAAGGTATCCGCTTTAGTGGGTCGCAACAATTCGGGTTGGAGAGTGTACCTCGTAGTCCAGGGAGTTTGACGAAGAAGAGATTATCTTCTGCTGAGGAACTTGCCATCATTGCTAGCTTCGCAGAAAGCCTCCAAAATGTGGTAGAAAAGTTGAAGAGGCTTATGGCTCCAATAGAAGAAGACCAATGCTTGAGCTTAATGCAACAAGACGGAGATGAGGAGGACGAAAATGAGGATGAAGGAGAGGAAGGGGAGTCAGACATCGAAGCTTAG 3390 0.4009 MANPASTSETIATNYDVFLSFRGEDTRHGFTGHLYDALCRNGINTFIDDENLRTGETIRPQLLHSIEASKISIIVFSTNYAASTWCLDELVQILRCHRERNQLVFPVFYKVEPSDVRHRRNTYKEAMDAHEIRFGCHSQKVKEWKEALAETSNRKGFHLKQGYEFKFIQEIVGKALTHIPPRQLLIEDHMVGLQTRVVEVKSHLYSWHRRLSSSESPKTKFYNNNTMLGIVGIGGSGKTTLAKALYNSICDQFECACFLFNIRKISDQEEGLVLLQKMLLSELLGEEKIKVRSVEKGITMIKERLRERKVLIVLDDVDKTEQLKALAGECDWFSQGTRIVITTRDKYLLTAHEIEKIYEMKLLSDPESLLLFCWNAFKMTRPKANYEDLSNQAIHYAQGLPLALKVIGSNLINKNLEEWKSALDKYEKNPPKDIQSVLRVSYDSLEGNEKDIFLDIACFFNGKKWEYVKNVLDGCGMFTEDGIRILVDKSLVTIKDGYLRMHDLIQNMGREIVKQEAPKEVSDRSRLWFHEDVLELLPDDKENKRIEGIKLVQCEEHNWTDNAFEKMKKLRILILRNTNLSCRIIPLPEQLRLLDWKGYPSNSIPSNLKKIVAFSLRHSPLMLEKPFQNFKHLTYMNFSHCESITHFPNVSEAQSLRKLILNGCINLVRFDESVGFLPNLTYLRASKCTKLRKFLSRICLPSLEHLSLNWCRRLGLFPDIVGKMDKPLKICLKATAIQELPDSFVDLVGLLYLDLTSCEKLGYLPSSLFMLPNFVTLKVGGCPQLGGSFARFRESLSTTAESCPSLKTLHLSHASLCDEDLHVIMQSFPNLEVLNVSSNNFVSIPACVQESSYLTSLDLSYCLNLQEIPELPSSVRKVDVRHCSSLSANTTNMLWAQVRKEIHKLQVVMPTSNTEIPEWWDYHGSWQGYPQYLNFEVRGKFPVVALAFVFGEMNYQPVGLHLSIDSRDYSAYQPSHNFTVAENHVLLCDLRVLFSDEGWKRLDAHAEHGNKWKTVKVKCVPDIIPVQWGVYVYKEETSMKGIRFSGSQQFGLESVPRSPGSLTKKRLSSAEELAIIASFAESLQNVVEKLKRLMAPIEEDQCLSLMQQDGDEEDENEDEGEEGESDIEA* 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0889 1129 Gene3D Ribonuclease Inhibitor 522 721 IPR032675 -
Amo13g0889 1129 ProSiteProfiles TIR domain profile. 13 179 IPR000157 GO:0007165
Amo13g0889 1129 Gene3D Ribonuclease Inhibitor 722 906 IPR032675 -
Amo13g0889 1129 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 156 IPR035897 -
Amo13g0889 1129 SMART till_3 14 154 IPR000157 GO:0007165
Amo13g0889 1129 Gene3D - 10 182 IPR035897 -
Amo13g0889 1129 Pfam NB-ARC domain 226 445 IPR002182 GO:0043531
Amo13g0889 1129 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 10 948 - -
Amo13g0889 1129 MobiDBLite consensus disorder prediction 1101 1129 - -
Amo13g0889 1129 Gene3D - 362 446 IPR042197 -
Amo13g0889 1129 PRINTS Disease resistance protein signature 397 411 - -
Amo13g0889 1129 PRINTS Disease resistance protein signature 227 242 - -
Amo13g0889 1129 PRINTS Disease resistance protein signature 304 318 - -
Amo13g0889 1129 PRINTS Disease resistance protein signature 745 761 - -
Amo13g0889 1129 SUPERFAMILY L domain-like 547 892 - -
Amo13g0889 1129 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 10 948 IPR044974 GO:0006952
Amo13g0889 1129 SUPERFAMILY "Winged helix" DNA-binding domain 433 537 IPR036390 -
Amo13g0889 1129 SMART AAA_5 224 364 IPR003593 -
Amo13g0889 1129 Coils Coil 409 429 - -
Amo13g0889 1129 MobiDBLite consensus disorder prediction 1105 1129 - -
Amo13g0889 1129 Pfam TIR domain 14 173 IPR000157 GO:0007165
Amo13g0889 1129 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 456 IPR027417 -
Amo13g0889 1129 Gene3D - 183 358 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0889 Amo-Chr13 11000625 11005124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0889 12 795 WRKY Transcription Factor Family AT4G12020 30.074 1.31e-84 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0889 - - ahf:112771910 2175.98