Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0853 ATGTTCACAGAGGATTCAGATCTCATTGTATTATTGTCTTCCATGGCGACGCTGATCTTATATATCTTCATTAGCGTTGTTGGGTCACTGTTAAGAACACTGATTGATGAAAGAAGCAGAGTCCCAGAGGCATCAACAACAGAAACAGAAGAGAGGAGGCAGATAAGAGATACTATTGTGATGGATCATATTGTAAGATTAATGGCTCATCAGAGAGAACATATAACAAGGCTGCAATTCAATGGTGATTCTGCTGTTATAACTATGGGTAGGAAAGCTTTGAGGGTGTTGCCACCGGTTAAGAGCTTTGTTGTTGAAGATAAAAGCAGTGGATGCTCCCCTCTTGAATGCTCTATTTGCATGGAAGTGTTTAAGGATGGGGAGTTGATTCAACCTCTTGGATTGTGTCCTCATCAGTTTCATTCTTCTTGTCTTTACTCTTGGCTTCATAGTGGAAAATCTACTTGCCCCCTTTGCCGTGTGGATTTAGCAACCACATAG 501 0.4112 MFTEDSDLIVLLSSMATLILYIFISVVGSLLRTLIDERSRVPEASTTETEERRQIRDTIVMDHIVRLMAHQREHITRLQFNGDSAVITMGRKALRVLPPVKSFVVEDKSSGCSPLECSICMEVFKDGELIQPLGLCPHQFHSSCLYSWLHSGKSTCPLCRVDLATT* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0853 166 SUPERFAMILY RING/U-box 116 164 - -
Amo13g0853 166 SMART ring_2 117 159 IPR001841 -
Amo13g0853 166 PANTHER OS06G0666500 PROTEIN 64 163 - -
Amo13g0853 166 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 165 IPR013083 -
Amo13g0853 166 Pfam Ring finger domain 116 160 IPR001841 -
Amo13g0853 166 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 64 163 - -
Amo13g0853 166 ProSiteProfiles Zinc finger RING-type profile. 117 160 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0853 Amo-Chr13 10634607 10635107 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0853 77 160 C3H Transcription Factor Family AT2G17450 40.659 1.49e-12 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0853 - K10664 aip:107632256 321.627