Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0852 ATGTTCATAGAGGGTTCAAGTCTTATTATATTATTGTCTTCCATGGCGACGCTGATCTTATATATTTTCATTAGCGTTGTTGGGTCACGGTTAAAAACACTGATTGATGAGAGAAGCAGAATCCCAGAGGCATCAACAACAGAAACAGAAACAGAAGAGAGGAGGCAGATAAGAGATACTATTGCGATGGATCATATTGTAAGATTAATGGCTCATCAGAGAGAACATCAAACAAGGCTGCAATTCAATGGTGATTCTGCTGTTATAACTATGGGTAGGAAAGCTTTGAGGGTGTTGCCACCGGTTAAGAGCTTTGTTGTTGAAGATAAAAGCAGTGGATGCTCCCCTCTTGAATGCTCTATTTGCATGGAAGTGTTTAAGGATGGGGAGTTGATTCAACCTCTTGGATTGTGTCCTCATCAGTTTCATTCTTCTTGTCTTTACTCTTGGCTTCATAGTGGAAAATCTACTTGCCCCCTTTGCCGTGTGGATTTAGCAACCGCATAG 507 0.4103 MFIEGSSLIILLSSMATLILYIFISVVGSRLKTLIDERSRIPEASTTETETEERRQIRDTIAMDHIVRLMAHQREHQTRLQFNGDSAVITMGRKALRVLPPVKSFVVEDKSSGCSPLECSICMEVFKDGELIQPLGLCPHQFHSSCLYSWLHSGKSTCPLCRVDLATA* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0852 168 Pfam Ring finger domain 118 162 IPR001841 -
Amo13g0852 168 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 73 165 - -
Amo13g0852 168 PANTHER OS06G0666500 PROTEIN 73 165 - -
Amo13g0852 168 SUPERFAMILY RING/U-box 118 166 - -
Amo13g0852 168 SMART ring_2 119 161 IPR001841 -
Amo13g0852 168 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 167 IPR013083 -
Amo13g0852 168 ProSiteProfiles Zinc finger RING-type profile. 119 162 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0852 Amo-Chr13 10625397 10625903 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0852 79 162 C3H Transcription Factor Family AT2G17450 40.659 2.03e-12 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0852 - K10664 aip:107632256 303.523