Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0842 ATGGATTGCATGAGAATCCAAAGCCCCTTGTCTCATAAGAAGAATTGGAAATATGATGTGTTTTTGCCTTCAGGGATGATACTAAGCTCCAGAAAGGAGGACTTATTATCTGCGGGGCTCCTGGAAGCTATTGAAGCATCACAGGTCCTGATTGTTGTCTTCTCTATCAACTATGCTTCCTCCACATGGTGCTTGCAAGAACTAGCAAAGATAGCTGATTGTATTGAAATACCGGGACAGCGTGTTCTGCCTGTTTTCTATGATGTGAGTCCGACTGAGGTGAGAAGGCAAAGTGGAAATTATGAGAAAGCCTTTATTAAACATGAACAAAGATTCAAAGATGATGCAGAAATGACGGAGCAAGTGCGAAGATGGAGGGCAGATCTAACACAAGTAGCCAATCTCTCTGGCTGGGATATGAGGAATAAGTCACAATCTGCTAAGATTGAGGAAATTGTGAAAGCAGTAACAAGTATATTGAGTCCCAAACCATCATCAAGTCTATCTAATGATATAGTTGGGATGCAATCCCCTTTAGAAGAACTCAAAAAGATTCTAGCTTTAGGCTTGGATGATGATGTTCGTGTGGTAGGGATTTGTGGAATGGGTGGTATAGGAAAGTCAACTCTTACCACCATTTTATATGAAGCAATCTCTCATCAATATGATGTTTCATGTTTTGTAGATGATGTAAGCGAAACATACAGACATTATGGTCCACTTGGTGTACAAAAGCAACTTCTTTGTCAAGCTTTCAAGGAAGAAAATTTTTCGACATACAATCTTTCAGTGGCAAATAATCTTATTCAAACTAGGTTACGCCATAGGAAGGTTTTCATAGTTCTAGATAATGTTGAAAAGGGAATTCAGTTGGAGAAGTTGGCTATAAAACAAGAATGGGTAGGTCCAGGGAGTAGAATAATTATAGTTTCTAGAGATGAACATATATTGAGAGAGTATGGAGTGGATGGAGTTTATAAAGTTCAACTCTTAAACTATGAGAATGCTCTGCAATTGTTTTGTAGAAAAGCTTTCAAATGTAATCATGTTGCACAAGATTACAGACGTTTGACAAATTCTGCATTAACATATGCTAGTGGACTCCCGTTAGCAATTAGAGTGTTGGGCTCATTTTTGTTTGGGCGAAATGTGTCTGAGTGGAGTAGTGCATTAGTTAGACTGAAAGAAAATCCAACAAAAGACATTCTAGATGTGCTTAGAATCAGTTATGATGGCCTTGAGGAGATGGAAAAGGAGATATTTCTTGATATTGCATGTTTCTTTCCCTCTGGGAAAGGAAAATGGTATGTAAAAGATATTTTAAGTATTCGAGGATTTCAACCTGATATTGGTTTAAGAATTCTCATTGATAAGTCACTCATAACTTATAAGCGGAATTTTATCAATATGCATGATTTGTTGAGAGATTTGGGTAGGAGTATTGTTCGAGAAAAATCACCCAAAGAACCAAGAAAGTGGAGTAGGTTATGGAATCAAAAGGATCTAAGTGATGTCTTGCGGGAAAATAAGGCAGCAGAAAACCTTGAAGCCATAGTTCTGCCAAGATTTCATCAAAATAGAGAAGAGATGTCAGAAAGGACAACACTGAGGGTTGAAGCTTTATCACAAATGAGGCACCTTAAATTACTCATCCTCAGAGAAGTGAATTTCTTAGGACGTCCTAATTTTCTTTCTAACGGGTTGGGGTATCTTGATTGGGAAGACTATTCTTTTACATGTTTGCCATCAAGCTTTCAGCCAAATAAACTCGTTAAATTAATCCTACATTATAGCAACATCAAAGAACTATGGGAGGGAATAAAGGATCTCCATAATTTGACATATCTGGAACTATGTCATTCCAAAAATCTTGTAAAGATACCAAATTTATCTCAGGCCCCAAATCTTMKGRACATAAATCTTAKAGGATGTGTGAAACTTGTTCACCTTGATGCATCTATTGGTTCTCTGGAAAAGCTTCTTTATTTGAATCTAGAAAACTGTAAAAATCTTGTGAGTATTCCCAACAGCATATTTCATCTTAATTCTCTTAAATATCTACACCTATCTGGGTGTTGGAAATTACTTAAATATCAGTTGTTAGAGAAACCAAGACAAAGCAAGCAGTTGAATACAGGTCAAAGTGTGCAAAGCCATATGACAACCTCCATATGCAAAACTCTTACAAGGCCTCTCAACTTTTTATCTTCTAGAAGGTGCTCCAATTCAGTTGGTTTGTTGGTGCCTACTTTGTCCCGTTTCCCAGCTTTGGTATATCTTGACATAAGTTTCTGTAATCTAGTTCAAATCCCTGATGCTATTGGACAGTTACGTTGTTTACAATATTTAAACATAGGGGGAAACAATTTTGTTACACCACCTCATTGCATCAAGGAACTTCCCAAGCTAACTTGGTTGAACTTGGAGTACTGTAAGCATCTAAAGTTGTTGCCTAGTACCTTTATGCCGATAGGAGGTACCAGTGGAAGAGGTTTCTATGGAGGAATATATGTTTTCAACTGCCCGAATTTGAGTGACACGGAAGGTTGTGGTGTGACAGTTATTTCATGGATGATAAAAATGATTCAGGTGAACCTGCAATGCTCCTTACCCAAATGCACAATTGAAGCTGTTGTTCAAGGAACTAAAATTCCAAGGTGGTTCAGCAAACAGAACACGGGTGGTTCAGTGAGCCTTGATCCATCTCTCATTGTGGATGACAATAATTGGATTGGCATTGCTTGTTGTGTAACATTTGTTGCACATCATGATCCAACTCAATTGTTTGAAGAAACAAGAGATCCTCGAGTTCTAATTGGTTTTGGTTTGCGTTGTACTCGTTCCTATGAGAACATTTATTCCCGAATTCCAATATGTCTTAAGAAAGATTTGATCACAACTGAAGTAGATCATATGTTGTTAAAGTTTATCTCCCGGGAAGTTTTCATCAATGATTATGCAAGGGAAATAAAAGAAGTAGCATCTGATCTTCATGGTATTGAATTGCATACCATAAGTGATTATCCAGAAGTAGTAGAAGTGAAGAGGTGTGGTTACCGTTGGATATTTAAGGAAGATTTGGAACAATTTAACCCAACTATGATGTTTAGCGCCAATTCTTCAGCTCAGAGTCCCAACCACAATTTTAGAGGGGAGACTCGCTTCAATTTCACCGATCATCTTTATGCTGCTCTCCGCAGACACGGCATGGTTGCCTTTAGGGATGATACTAGGCTCCAGAAAGGAGGACCTATATCAGCAGGGCTTCTGCAATCTATTGGAGGACCTAAAAAGCTCTTGGCAAGGTATGAAAAATTAAAGTTCTATCCTAGGGAGACTCGCTTCAATTTCACCGATCATCTTTATGCTGCTCTCCGCAGACACGGCATGGTTGCCTTCAGGGATGATACTAGGCTCCAGAAAGGAGGACCTATATCAGCAGGGCTTCTGCAATCTATTGAAGGATCACAGGTTCTGATTGTTGTCTTCTCTATCAACTATGCTTCTTCCACATGGTGCTTGCAAGAACTGGCAAAGATAGCTGATTACATGAACATACCGGGACACCGTGTTCTGCCTGTTTTTTGTGATGTGAGTCCATCTGAGGTGAGAAAGCAAAGTGGAAATTACGAAAAAGCCTTTGTGGAACACGAAGAAAGATTCAAAGAAGATGCGGAGATGATGGAGCAAGTGCGAAGATGGAGGGCAGCTCTAACACAAGTAGGCAGTCTCTCTGGCTGGGATCTCAAGGATAAGTCACAATCCGCTGAGATTGAAAAAATTGTGAAAGTGGTAACAAGCATAGTGAGTCCCAAACCATCATCAAGTCAATCTGATGATATAGTTGGGATGCATTCTCCTCTACAAGAATTAGAAAAGCTTCTACTTTTGTACTCAGACGATGATGTTCGAGTTCGAGTTGTAGGGATTTGTGGAATGGGCGGCATAGGAAAGTCAACTCTTGCCACCATTTTATATGAAAAAATCTCTCATCAATATGATGCTTCATGTTTTGTGGATGATGTAAGTAGAATTTACGGAGGTTATGGTCCACTTGGTGTACAAAAGCAACTTCTTTGTCAAGCTTTCATGGAAGAAAATTTTTCGACATTCAATCTTTCATTGGCAAATAATCTGATTCAAACTAGGTTACGGCATAGAAAGGTTCTGATAGTTCTTGATAATGTTGATGAGGGGATTCAATTGGAGAAGTTGGCTATAAAACGGGAAAGGCTCGGTAGAGGGAGTAGAATAATCATAGTTTCTAGAGATGAGCATATATTGAGAGAGTATGGAGCGGACGACGTTTACAAAGTTCCACTCTTAAATGATGAGAATACTCGCCAATTGTTTTGCAGAAAAGCTTTCAAATGTAATCACGTTGCAAAAGATTACGAAAGCCTCACAAATTCTGCATTAAGATATGCTAATGGACTTCCATTAGCAATCAGAGTATTGGGCTCATTTTTGTTTGGGCGAAATCCAACAAAAGATATTCTGGATGTGCTACGAATCAGTTTTGATGCACTTGACGATATGGAAAAGAAAATATTTCTTGATATTGCTTGTTTTTTTTCAGATCATGGTGAAGAATACGTGAAAGATATTTTACGTATTCGAGGATTTCATCCTGAGATTGGTATAAAAATTCTCAATGATAAATCACTCATAACTCGACGAGAATCGTGGATAATTATGCACGATCTGTTGAGAGAGTTGGGTAGAAGTATTGTTCGAGAAAAATCACCATACGAACCAAGAAAGTGGAGCAGGTTATGGAATCAAAAGGATCTAAGCAATGTCTTGAGGGAAAACAAGATAGCAGAAAACCTTGAGCTTGAAGCCATAGTTCTGCGAGAATTTTGTAAAAGCAGGGAAGAGTTGCCAGTTGAAGCTTTATCACAAATGAGTAACCTGAAATTGCTTATACTTAGAGATAGAAATTTGAATTTCTCAGGATGCTTGCATTTTCTTTCTAATGAGTTGGGATATCTTGAATGGCAAAAATATCCTTGCACATCTTTGCCATCAAGCTTTCAGCCAAATAAACTCGTTAAACTAATCCTGTGCCATAGCAACATGAAAGAACTCTGGAAGGGAATAAAGGATCTACCAAAATTGACACATATAGTACTAAGTGATTCTAAGAATCTTGTCAAGATACCAAACTTATCTCAGGCCCCAAATCTTGAGGAACTAAATCTTGAAGGATGTGTTAAACTTGTTCACCTTGATCCATCTGTTGGTTCTCTACAAAAGCTTCATTCCTTAAATCTGAACAACTGCAAAAGCCTTGTAAAGATACCCTACTTCTTATCTCCGACTCCAAGTCTTGAGGAGCTAAATCTTGCAGGATGCGATAAAGTTGTTCACTTTGATGCATCCGTTGGTTCTCTAGAAAAGCTTCGTTGCTTGAATTTGAAAAACTGCAAAAATCTTGTTAGTATTCCCAATTGCATATTTGGTCTTAATTCTCTTCAAAATTTAAATCTATCTGGCTGTTCAAAATTATTTAGATATCAGTTGTTAGAGAAACCAAGACAGATGCAAAGCCACATGACATCATCCATATGCAAAACTCTTACAAGGCCTCTCCATTTTTTATCTTCCAAAAGGCGTTTGAATTCAATTGGTTTATCGGTGTCTTCTTTGTCCCGTTTCCCAACTTTGACATATCTTGACATAAGTTTCTGTAATCTAGTTGAAATCCCTGATGCTATTGGACTGTTACATTGTTTAGAACGCTTAAATATAGGGGGAAACAATATTGTTACGCTACCATATTGCGTCAAGGAACTTCCCAAGCTAAGCGTGCTGAATTTGGAGCACTGTAAGAATCTAAAGTGCTTGCCAAGTACACTTCTGCCGATCAGAAGAGTATATCGTGGAGGAATATATGTTTTCAACTGCTCGAATTTGAGTGACACGGAAGGTTGTCGTGTGACCGTTATTTCATGGATGATAAGAATGATTCAGGCGAACCTGCAATGCACTTTCCCCAGATGCATAATTGAAGCTGTTGTTCCAGGAACTAAAATTCCAAGGTGGTTCAGCAAACAGAATACGGGTAATTCAATGAGGCTGGATCCATCTCCCATTGTGGATGACAATAATTGGATTGGCATTGCTGCTTGTGCAACATTTGTTGCACATCATGCTTCAACCCAATTTGTTGGACGAGAGACAGGATCTCTTTTACGTTATCGTTTTCGTGGTAATCCGCTTGGGCCCATTGGTTGCCCTGTTCCAATACAGTTTAAGCAAGATTTGATCACAACTGAATTGGATCATATGTTGCTAATGTTTCTATCCCACCAATATATCGTTAAAAGGGGTTCAAAAGAAGGAGCATATTATCTTGATGGTATTGAATTGGCCATCGAAAGTAATTATCCAGAAGTAGTAGAAGTGAAGAGTTGTGGTTACCGTTGGGTATTTAAGCAAGATGTGCAACATTTTAACCCAACAATGATGTACACCGCCAATTCTTCATCTCACCACAATCAGAACCACAATGTTTTGGCAATTCAAGATGACCAATTAATTTTTTCTAGTATTTCTTATAATTTTACTATTTTTAATTATATTTTTATTGTTTAA 6600 0.3818 MDCMRIQSPLSHKKNWKYDVFLPSGMILSSRKEDLLSAGLLEAIEASQVLIVVFSINYASSTWCLQELAKIADCIEIPGQRVLPVFYDVSPTEVRRQSGNYEKAFIKHEQRFKDDAEMTEQVRRWRADLTQVANLSGWDMRNKSQSAKIEEIVKAVTSILSPKPSSSLSNDIVGMQSPLEELKKILALGLDDDVRVVGICGMGGIGKSTLTTILYEAISHQYDVSCFVDDVSETYRHYGPLGVQKQLLCQAFKEENFSTYNLSVANNLIQTRLRHRKVFIVLDNVEKGIQLEKLAIKQEWVGPGSRIIIVSRDEHILREYGVDGVYKVQLLNYENALQLFCRKAFKCNHVAQDYRRLTNSALTYASGLPLAIRVLGSFLFGRNVSEWSSALVRLKENPTKDILDVLRISYDGLEEMEKEIFLDIACFFPSGKGKWYVKDILSIRGFQPDIGLRILIDKSLITYKRNFINMHDLLRDLGRSIVREKSPKEPRKWSRLWNQKDLSDVLRENKAAENLEAIVLPRFHQNREEMSERTTLRVEALSQMRHLKLLILREVNFLGRPNFLSNGLGYLDWEDYSFTCLPSSFQPNKLVKLILHYSNIKELWEGIKDLHNLTYLELCHSKNLVKIPNLSQAPNLXXINLXGCVKLVHLDASIGSLEKLLYLNLENCKNLVSIPNSIFHLNSLKYLHLSGCWKLLKYQLLEKPRQSKQLNTGQSVQSHMTTSICKTLTRPLNFLSSRRCSNSVGLLVPTLSRFPALVYLDISFCNLVQIPDAIGQLRCLQYLNIGGNNFVTPPHCIKELPKLTWLNLEYCKHLKLLPSTFMPIGGTSGRGFYGGIYVFNCPNLSDTEGCGVTVISWMIKMIQVNLQCSLPKCTIEAVVQGTKIPRWFSKQNTGGSVSLDPSLIVDDNNWIGIACCVTFVAHHDPTQLFEETRDPRVLIGFGLRCTRSYENIYSRIPICLKKDLITTEVDHMLLKFISREVFINDYAREIKEVASDLHGIELHTISDYPEVVEVKRCGYRWIFKEDLEQFNPTMMFSANSSAQSPNHNFRGETRFNFTDHLYAALRRHGMVAFRDDTRLQKGGPISAGLLQSIGGPKKLLARYEKLKFYPRETRFNFTDHLYAALRRHGMVAFRDDTRLQKGGPISAGLLQSIEGSQVLIVVFSINYASSTWCLQELAKIADYMNIPGHRVLPVFCDVSPSEVRKQSGNYEKAFVEHEERFKEDAEMMEQVRRWRAALTQVGSLSGWDLKDKSQSAEIEKIVKVVTSIVSPKPSSSQSDDIVGMHSPLQELEKLLLLYSDDDVRVRVVGICGMGGIGKSTLATILYEKISHQYDASCFVDDVSRIYGGYGPLGVQKQLLCQAFMEENFSTFNLSLANNLIQTRLRHRKVLIVLDNVDEGIQLEKLAIKRERLGRGSRIIIVSRDEHILREYGADDVYKVPLLNDENTRQLFCRKAFKCNHVAKDYESLTNSALRYANGLPLAIRVLGSFLFGRNPTKDILDVLRISFDALDDMEKKIFLDIACFFSDHGEEYVKDILRIRGFHPEIGIKILNDKSLITRRESWIIMHDLLRELGRSIVREKSPYEPRKWSRLWNQKDLSNVLRENKIAENLELEAIVLREFCKSREELPVEALSQMSNLKLLILRDRNLNFSGCLHFLSNELGYLEWQKYPCTSLPSSFQPNKLVKLILCHSNMKELWKGIKDLPKLTHIVLSDSKNLVKIPNLSQAPNLEELNLEGCVKLVHLDPSVGSLQKLHSLNLNNCKSLVKIPYFLSPTPSLEELNLAGCDKVVHFDASVGSLEKLRCLNLKNCKNLVSIPNCIFGLNSLQNLNLSGCSKLFRYQLLEKPRQMQSHMTSSICKTLTRPLHFLSSKRRLNSIGLSVSSLSRFPTLTYLDISFCNLVEIPDAIGLLHCLERLNIGGNNIVTLPYCVKELPKLSVLNLEHCKNLKCLPSTLLPIRRVYRGGIYVFNCSNLSDTEGCRVTVISWMIRMIQANLQCTFPRCIIEAVVPGTKIPRWFSKQNTGNSMRLDPSPIVDDNNWIGIAACATFVAHHASTQFVGRETGSLLRYRFRGNPLGPIGCPVPIQFKQDLITTELDHMLLMFLSHQYIVKRGSKEGAYYLDGIELAIESNYPEVVEVKSCGYRWVFKQDVQHFNPTMMYTANSSSHHNQNHNVLAIQDDQLIFSSISYNFTIFNYIFIV* 2200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0842 2199 Pfam Leucine Rich Repeat 589 608 IPR011713 -
Amo13g0842 2199 Gene3D - 12 162 IPR035897 -
Amo13g0842 2199 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1271 1521 IPR027417 -
Amo13g0842 2199 SUPERFAMILY Toll/Interleukin receptor TIR domain 1048 1099 IPR035897 -
Amo13g0842 2199 Pfam TIR domain 1109 1275 IPR000157 GO:0007165
Amo13g0842 2199 Pfam TIR domain 37 169 IPR000157 GO:0007165
Amo13g0842 2199 SUPERFAMILY L domain-like 1566 1955 - -
Amo13g0842 2199 Pfam C-JID domain 880 1028 IPR045344 -
Amo13g0842 2199 Pfam C-JID domain 2008 2151 IPR045344 -
Amo13g0842 2199 Pfam NB-ARC domain 178 400 IPR002182 GO:0043531
Amo13g0842 2199 Pfam NB-ARC domain 1297 1492 IPR002182 GO:0043531
Amo13g0842 2199 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 424 IPR027417 -
Amo13g0842 2199 Gene3D - 1270 1437 IPR027417 -
Amo13g0842 2199 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 1104 1765 - -
Amo13g0842 2199 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 1040 1093 - -
Amo13g0842 2199 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1765 1841 IPR044974 GO:0006952
Amo13g0842 2199 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 32 896 IPR044974 GO:0006952
Amo13g0842 2199 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 1765 1841 - -
Amo13g0842 2199 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 32 896 - -
Amo13g0842 2199 Gene3D - 1047 1101 IPR035897 -
Amo13g0842 2199 Gene3D - 1106 1269 IPR035897 -
Amo13g0842 2199 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1104 1765 IPR044974 GO:0006952
Amo13g0842 2199 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1040 1093 IPR044974 GO:0006952
Amo13g0842 2199 SMART till_3 17 135 IPR000157 GO:0007165
Amo13g0842 2199 SMART till_3 1109 1244 IPR000157 GO:0007165
Amo13g0842 2199 Gene3D Ribonuclease Inhibitor 1872 1987 IPR032675 -
Amo13g0842 2199 SUPERFAMILY L domain-like 470 821 - -
Amo13g0842 2199 Gene3D Ribonuclease Inhibitor 723 893 IPR032675 -
Amo13g0842 2199 ProSiteProfiles TIR domain profile. 1101 1269 IPR000157 GO:0007165
Amo13g0842 2199 SUPERFAMILY Toll/Interleukin receptor TIR domain 35 138 IPR035897 -
Amo13g0842 2199 SMART AAA_5 193 332 IPR003593 -
Amo13g0842 2199 SMART AAA_5 1304 1442 IPR003593 -
Amo13g0842 2199 Gene3D Ribonuclease Inhibitor 522 720 IPR032675 -
Amo13g0842 2199 Gene3D Ribonuclease Inhibitor 1772 1871 IPR032675 -
Amo13g0842 2199 Gene3D Ribonuclease Inhibitor 1595 1771 IPR032675 -
Amo13g0842 2199 SUPERFAMILY Toll/Interleukin receptor TIR domain 1109 1247 IPR035897 -
Amo13g0842 2199 Gene3D - 163 322 IPR027417 -
Amo13g0842 2199 Pfam Leucine rich repeat 1888 1945 IPR001611 GO:0005515
Amo13g0842 2199 Pfam Leucine rich repeat 755 811 IPR001611 GO:0005515
Amo13g0842 2199 PRINTS Disease resistance protein signature 1383 1397 - -
Amo13g0842 2199 PRINTS Disease resistance protein signature 1307 1322 - -
Amo13g0842 2199 PRINTS Disease resistance protein signature 1931 1947 - -
Amo13g0842 2199 PRINTS Disease resistance protein signature 1476 1490 - -
Amo13g0842 2199 Gene3D - 1441 1519 IPR042197 -
Amo13g0842 2199 Gene3D - 330 414 IPR042197 -
Amo13g0842 2199 ProSiteProfiles TIR domain profile. 1 160 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0842 Amo-Chr13 10478622 10511471 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0842 41 806 WRKY Transcription Factor Family AT4G12020 29.644 4.67e-77 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0842 - - aip:107628789 1497.64