Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0827 ATGAGCACTTCACAGGGTGTTATTACCTGTAAAGCTGCAGTGTGCTGGGGATTAGGAATGACACTAAAGCTTGAAGAGATTCAAGTTGATCCGCCGAAATCAGGCGAAGTTCGAGTTAAGATGCTTTGTGCTAGCATCTGCCACACTGATGTTTCAGGCATTCAAGGATCTCCATATGTTAATGGTTTCCCTCTAGTACCTGGACATGAAGGAGTTGGTGTTGTAGAGACAGTTGGAGATGAAGTGAAAAATCTTAAAGAAGGGGATATGGTGATCCCAACATATATAGGAGAGTGTGGACATTGCCGGAATTGTGTTTCTGGAAAGACCAACCTTTGCCTGACATATCCTTTCAGAATTACTGGCTTCATGCCAGATAACACTTCTAGAATGTCCTGCAGAGGCAAGAAGTTAAAACACACTTGGACTTGCGCCACGTGGTCCGAGTACACGGTTGTCAATGCCAATTACCTTCTCAAGGTTGATCCAGGCATCAATCTAGCCCATGCTAGCTTCATCTCATGTGGGTTTTCAACTGGCTATGGAGCTGCATGGAAGGAAGCCCAAGTTGAAAGTGGATCAAGTGTTGCTGTTTTTGGTCTTGGTGCTGTAGGATTAGGGGCTATAAGCGGAGCGAAAATGCTGGGGGCTACTAAGATAATAGGGATTGACACAAATGAGATGAAGAGAGAAAAAGGGAAAGCTTTTGGAATGACTGATTTTATAAATCCTCAAGATTCTGATAAACCTCCATCAGAATTGGTGAAGGAACTGAGTGATGGATTTGGTGTGGATTATTCTTTTGAGTGCACTGGAGTTCCATCTTTGATTAGTGAATCCTTAGCAGCCACAAAGATGGGAACCGGTAAAGCAATATCTATTGGCGCGCCAAATGAACCTATTGTGCCTTTCAATCATACAACAATTCTGGCTGGCAGAACTCTGAAGGGTTCTGTTTTTGGAGGTCTAAAAACCATGTCAGACCTTTCAATTGTAGCTGACAAATGCCAAAAGGAGGAGTTCCCTCTTCAGGAGCTATTCACCCATGAGGTCCCATTGACAGATATAAGCAAAGCATTTGATCTACTCAAAGAGCCAAATTGTGTCAAAGTTGTCATCAAGATATGA 1128 0.4309 MSTSQGVITCKAAVCWGLGMTLKLEEIQVDPPKSGEVRVKMLCASICHTDVSGIQGSPYVNGFPLVPGHEGVGVVETVGDEVKNLKEGDMVIPTYIGECGHCRNCVSGKTNLCLTYPFRITGFMPDNTSRMSCRGKKLKHTWTCATWSEYTVVNANYLLKVDPGINLAHASFISCGFSTGYGAAWKEAQVESGSSVAVFGLGAVGLGAISGAKMLGATKIIGIDTNEMKREKGKAFGMTDFINPQDSDKPPSELVKELSDGFGVDYSFECTGVPSLISESLAATKMGTGKAISIGAPNEPIVPFNHTTILAGRTLKGSVFGGLKTMSDLSIVADKCQKEEFPLQELFTHEVPLTDISKAFDLLKEPNCVKVVIKI* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0827 375 Gene3D - 180 318 - -
Amo13g0827 375 PANTHER ALCOHOL DEHYDROGENASE 5 374 - -
Amo13g0827 375 PANTHER ALCOHOL DEHYDROGENASE-RELATED 5 374 - -
Amo13g0827 375 SUPERFAMILY GroES-like 5 199 IPR011032 -
Amo13g0827 375 Gene3D - 14 370 - -
Amo13g0827 375 Pfam Zinc-binding dehydrogenase 203 327 IPR013149 -
Amo13g0827 375 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Amo13g0827 375 Pfam Alcohol dehydrogenase GroES-like domain 35 161 IPR013154 -
Amo13g0827 375 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 165 336 IPR036291 -
Amo13g0827 375 CDD liver_alcohol_DH_like 8 374 - -
Amo13g0827 375 SMART PKS_ER_names_mod 19 373 IPR020843 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0827 Amo-Chr13 10417906 10420664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0827 36 301 Monolignol Biosynthesis Gene Families AT4G37980 29.851 1.35e-19 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0827 K00121 - gmx:100798341 559.681