Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0810 ATGAGAACCCTCTGCGACGTATGCGAAAACGCCGCTGCAATTTTATTCTGCGCCGCCGACGAGGCCGCTCTTTGCCGCTCTTGCGATGACAAGGTCCACATGTGTAACAAACTTGCTAGTAGACATGTTCGAGTTGGACTTGCTGATCCTAGTGATGTTCCTCGATGTGATATATGTGAAAATGCACCTGCTTTCTTTTACTGTGAGATAGACGGTAGTTCGTTGTGTCTACAATGTGATATGATAGTACATGTTGGTGGTAAAAGAACTCATGAAAGGTATCTCTTGTTGAGACAGAGAATTGAGTTTCCAAGTGACAAAACTGGTGGATTGGATGAATTTGGATTGCAAACTTTGGATCAAAATGAACCAAGGAGAGACCAGAGTCAATCAATCAAGCTGAATGCAAGAGATAACCACCAGAGTCACAATCACAAGGTTATATCAGTTACAATGCTAGAAAATAATATTGATGGTCATAGAAAAGTGGACAAAAAACTGTTTGATCTTAATACCAGGCCACAACGGATAAATGGTTCAACATCAAACAACCTGGATAAGGATATATTGGGCAGTAATAATCATGATTCTATTGGTGTTGTACCGGTAGAATTGTTCAAACAAGAAGCTGAGAAGTAA 639 0.4038 MRTLCDVCENAAAILFCAADEAALCRSCDDKVHMCNKLASRHVRVGLADPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHERYLLLRQRIEFPSDKTGGLDEFGLQTLDQNEPRRDQSQSIKLNARDNHQSHNHKVISVTMLENNIDGHRKVDKKLFDLNTRPQRINGSTSNNLDKDILGSNNHDSIGVVPVELFKQEAEK* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0810 212 CDD Bbox1_BBX-like 4 47 - -
Amo13g0810 212 MobiDBLite consensus disorder prediction 174 191 - -
Amo13g0810 212 Gene3D Classic Zinc Finger 2 95 - -
Amo13g0810 212 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Amo13g0810 212 PANTHER B-BOX ZINC FINGER PROTEIN 21 1 212 - -
Amo13g0810 212 CDD Bbox1_BBX-like 56 96 - -
Amo13g0810 212 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 212 - -
Amo13g0810 212 MobiDBLite consensus disorder prediction 174 193 - -
Amo13g0810 212 Pfam B-box zinc finger 52 92 IPR000315 GO:0008270
Amo13g0810 212 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Amo13g0810 212 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Amo13g0810 212 SMART bboxneu5 1 47 IPR000315 GO:0008270
Amo13g0810 212 SMART bboxneu5 51 96 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0810 Amo-Chr13 10074584 10076844 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0810 1 212 C2C2-CO-like Transcription Factor Family AT4G38960 59.906 2.25e-83 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Amo13g0810 zf-B_box 2.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0810 - - gmx:100818604 328.946