Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0803 ATGGAAGTTGTGGTGGCCAAAGCGTTGAAACCAAGCTTAAGGGGAGAGCTTATTTTCCAGCCACCACTTGCACTCGGCGACGAGTTTTTGTGCTTCAACGCCGTCAACAACGGCGGCGCCGTTGGCGAAGATTTCTCCGTCGACGACCTCCTTGACTTCTCCGAATTCCAACATGGTTCTGTAGGAAAAGGAATCGATGTCTCCGAAGAAGAAGAAGACGAAGAAGACGAAGAAAAAGACAGCACCTCGGGAAGTTCCTCACAGGACCGTACAGAAAACGACACCAACTCCAATTCCTCCAACGCCGCCGTAGACTCCGACTCCATTTTCGCCGGCGAATTGTCCGTTCCGGACGATGATTTGGCGGACCTGGAATGGGTTTCTCACTTTGTGGATGATTCAATACCGGAGCTCTCTCTCTTGTACCCTGTACGTTCTGAGCAAACAAGGGCCCGGGCTCAACCTGAACCTAAACCGGGCTCAGCTGTAACTTCTCTTCCCCATGGAGTCCCTGTCAAGCCCAGGACCACGAGGACAAGGAAGCCCAACGGCCGCTTATTGTGGTCCTTTGGCAACTTGTTCTCGCCTCCCTCTTCGCCGTCCTCGTGCTCCTCCTCTGTGCTTTCCTCGACGGCGGCGCCTCTCGTTTTGCATGGGGAGCCGCCGGCGAAGAAGCAGAAGAGAAAGCCCGAGGAGCAAGCCTGTGGGCTCCAGTTTCAGCGACGGTGCAGTCATTGCCAAGTTCAGAAAACGCCGCAGTGGAGAACAGGCCCTATGGGCCCCAAAACACTCTGCAACGCTTGCGGAGTCCGGTACAAGTCGGGCCGGCTTTTCCCGGAGTACAGGCCCGCATGCAGCCCGACGTTCTCAGGTGATATTCACTCAAATAGCCACCGTAAGGTGTTAGAGATGAGGCGTAGGAAGGAGATGTCTGGGCCGGAGCCCAGTCCAGACCGGGCCTTCATGCTTCCGAGCTGCTGA 981 0.5586 MEVVVAKALKPSLRGELIFQPPLALGDEFLCFNAVNNGGAVGEDFSVDDLLDFSEFQHGSVGKGIDVSEEEEDEEDEEKDSTSGSSSQDRTENDTNSNSSNAAVDSDSIFAGELSVPDDDLADLEWVSHFVDDSIPELSLLYPVRSEQTRARAQPEPKPGSAVTSLPHGVPVKPRTTRTRKPNGRLLWSFGNLFSPPSSPSSCSSSVLSSTAAPLVLHGEPPAKKQKRKPEEQACGLQFQRRCSHCQVQKTPQWRTGPMGPKTLCNACGVRYKSGRLFPEYRPACSPTFSGDIHSNSHRKVLEMRRRKEMSGPEPSPDRAFMLPSC* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0803 326 SMART GATA_3 237 291 IPR000679 GO:0006355|GO:0043565
Amo13g0803 326 CDD ZnF_GATA 242 299 IPR000679 GO:0006355|GO:0043565
Amo13g0803 326 ProSiteProfiles GATA-type zinc finger domain profile. 241 273 IPR000679 GO:0006355|GO:0043565
Amo13g0803 326 PANTHER GATA TRANSCRIPTION FACTOR 1 325 - -
Amo13g0803 326 MobiDBLite consensus disorder prediction 305 326 - -
Amo13g0803 326 ProSitePatterns GATA-type zinc finger domain. 243 268 IPR000679 GO:0006355|GO:0043565
Amo13g0803 326 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 240 300 - -
Amo13g0803 326 MobiDBLite consensus disorder prediction 86 104 - -
Amo13g0803 326 PIRSF Txn_fac_GATA_plant 28 319 IPR016679 GO:0003677|GO:0005634|GO:0045893
Amo13g0803 326 Gene3D - 236 286 IPR013088 GO:0006355|GO:0008270
Amo13g0803 326 Pfam GATA zinc finger 243 276 IPR000679 GO:0006355|GO:0043565
Amo13g0803 326 MobiDBLite consensus disorder prediction 149 182 - -
Amo13g0803 326 MobiDBLite consensus disorder prediction 61 104 - -
Amo13g0803 326 PANTHER GATA TRANSCRIPTION FACTOR 1 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0803 Amo-Chr13 10009830 10012047 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0803 8 309 C2C2-Gata Transcription Factor Family AT5G66320 42.901 1.07e-57 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Amo13g0803 GATA 7.1e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0803 - - adu:107476627 588.186