Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0796 ATGGAAGTTGTGGTGGCCAAAGCGTTGAAACCAAGCTTGAGGGGAGAGCTTATTTTCCAGCCACCACTTGCACTCGGCGACGAGTTTTTGTGCTTCAACGCCGTCAACAACGGCGCCGCCGTTGGCGAAGATTTCTCCGTCGACGACCTCCTTGACTTCTCCGAATTCCAACATGGTTCTGTAGGAAAAGGAATCGATGTTTCCGAAGAAGAAGAAGACGAAGAAGACGAAGAAAAAGACAGCACCTCGGGAAGTTCCTCACAGGACCGTACAGAAAACGACACCAACTCCAATTCCTCCAACGCCGCCGTAGACTCCGACTCCATTTTCGCCGGCGAATTGTCCGTTCCGGACGATGATTTGGCGGACCTGGAATGGGTTTCTCACTTTGTGGATGATTCAATACCGGAGCTCTCTCTCTTGTACCCTGTACGTTCTGAACAAACAAGGGCCCGGGCTCAACCTGAACCTAAAACGGGCTCAGCTGTAACTTCTCTTCCCCATGGAGTCCCTGTTAAGCCCAGGACCACGAGGACAAGGAAGCCCAACGGCCGCTTATTATGGTCCTTTGGCAACCTGTTCTCGCCTCCCTCTTCGCCGTCCTCGTGCTCCTCCTCTGTGCTTTCCTCGACGGCGGCGCCTCTCGTTTTGCATGGGAAGCCGCCGGCGAAGAAGCAGAAGAGAAAGCCCGAAGAGCAAGCCTGTGGGCTCCAGTTTCAGCGACGGTGCAGTCATTGCCAAGTTCAGAAAACGCCGCAGTGGAGAACAGGCCCTATGGGCCCCAAAACACTCTGCAACGCCTGCGGAGTCCGGTACAAGTCGGGCCGGCTTTTCCCGGAGTACAGGCCCGCATGCAGCCCGACGTTCTCAGGTGATATTCACTCAAATAGCCACCGTAAGGTGTTAGAGATGAGGCGTAGGAAGGAGATGTCTGGGCCGGAGCCCAGTCCAGACCGGGCCTTCATGCTTCCGAGCTGCTGA 981 0.5545 MEVVVAKALKPSLRGELIFQPPLALGDEFLCFNAVNNGAAVGEDFSVDDLLDFSEFQHGSVGKGIDVSEEEEDEEDEEKDSTSGSSSQDRTENDTNSNSSNAAVDSDSIFAGELSVPDDDLADLEWVSHFVDDSIPELSLLYPVRSEQTRARAQPEPKTGSAVTSLPHGVPVKPRTTRTRKPNGRLLWSFGNLFSPPSSPSSCSSSVLSSTAAPLVLHGKPPAKKQKRKPEEQACGLQFQRRCSHCQVQKTPQWRTGPMGPKTLCNACGVRYKSGRLFPEYRPACSPTFSGDIHSNSHRKVLEMRRRKEMSGPEPSPDRAFMLPSC* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0796 326 SMART GATA_3 237 291 IPR000679 GO:0006355|GO:0043565
Amo13g0796 326 CDD ZnF_GATA 242 299 IPR000679 GO:0006355|GO:0043565
Amo13g0796 326 PIRSF Txn_fac_GATA_plant 28 319 IPR016679 GO:0003677|GO:0005634|GO:0045893
Amo13g0796 326 ProSiteProfiles GATA-type zinc finger domain profile. 241 273 IPR000679 GO:0006355|GO:0043565
Amo13g0796 326 MobiDBLite consensus disorder prediction 305 326 - -
Amo13g0796 326 ProSitePatterns GATA-type zinc finger domain. 243 268 IPR000679 GO:0006355|GO:0043565
Amo13g0796 326 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 240 300 - -
Amo13g0796 326 MobiDBLite consensus disorder prediction 86 104 - -
Amo13g0796 326 Pfam GATA zinc finger 243 276 IPR000679 GO:0006355|GO:0043565
Amo13g0796 326 PANTHER GATA TRANSCRIPTION FACTOR 1 325 - -
Amo13g0796 326 MobiDBLite consensus disorder prediction 146 182 - -
Amo13g0796 326 PANTHER GATA TRANSCRIPTION FACTOR 1 325 - -
Amo13g0796 326 MobiDBLite consensus disorder prediction 61 104 - -
Amo13g0796 326 Gene3D - 236 286 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0796 Amo-Chr13 9902984 9905236 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0796 8 309 C2C2-Gata Transcription Factor Family AT5G66320 42.284 6.54e-57 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Amo13g0796 GATA 7.1e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0796 - - adu:107476627 590.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0796 13 9902984 9905236 Amo13g0796 13 9902984 9905236 ECH