Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0779 ATGAGAACCTCATTGTGTTGTAGCATTATTCTATTGAGTTTCGTCTTCATTTGGCTGAATAATGTAACAGTAACAGTGTTAGGATCTTCCTTCAGCGACCTCGACACGTTGTTGAAGCTCAAGGAAGCCATGAAAGGATCAAAAGCCAAACCCGACGCGCTTCAAGATTGGAAATTCTCAACCTCTATCTCCGCTCACTGTTCATTCTCCGGCGTCACCTGCGACCGCCAGAACCTCCGCGTGGTGGCTCTTAACGTCTCCTTTGTTCCCCTTTTCGGCAGCATTCCGCCGGAGATAGGCCTCTTGGACAAGCTCGAGAGCCTTACCCTCTCATCGGACAATCTCACCAAGGAGCTTCCCATGGAGCTCGCCAATCTCACCTCCCTCAAGCTCCTCAACATCTCGCACAACCTTTTCTCTGGTCGCTTCCCCGGCGATATCACCGTGGCCATGACAGAACTCGAAACGCTGGACATCTACGACAACAGTTTCAACGGAGCCTTACCAGAGGAGTTCGTGAGACTGGAGAAGCTCCGGTGCCTCAACCTCTCTGGAAACTATTTCTCCGGCGAGATTCCTGAGAGTTACTCTGAGTTCGAAAGCTTGGAGATTCTGAACCTCGCCACAAACAGCTTAACCGGCAAGATTCCAAGAAGTTTGGTGAAATTGAAGAAGCTGAAAAGACTATCCCTCGGGTATGAGAATTCCTACTCAGATGTAGTACCTACAGAATTCGGTTCGTTCGAGTCGTTGCAACTGCTTGATTTGTCCAGCTGTAACTTGAGCGGTGAGATTCCTCCCACGCTCGGCGCGTTAACTCACTTGCACAGTCTCTTCCTTCAAATGAACAACCTTACCGGAACCATTCCTTCACAACTCTCCACTATGATAAGCCTCAAGTCGTTGGATCTCTCCTACAACGAGTTAACGGGCGAGTTTCCGTTGACATTCTCTAAGCTCACCAATCTCACGCTAATCAATTTCTTCCATAACAAACTCCGAGGCAACATCCCTTCCTTCGTTGGGGACCTCCCGAACCTGGAGACGTTTCAGGTTTGGGGTAACAACTTCTCCAACGTGCTTCCACCCAACCTTGGCCAAAACGCCAGATTCTTATACTTCGACGTCACTAATAACCACTTCACTGGAGAGCTCCCTAGGGACCTGTGCAAATCCGGCAGGTTGAGAACGTTCTTAGCCACCGGTAACTTCTTCTACGGCACCATTCCTGAAGGAATAGGAGGTTGCGTTTCGTTGGAGAAGATAAGAATTAGTGATAACTTCCTCCAAGGCCAGGTTCCTCCTGGGATCTTTAAATTGCCAGCTGTCCAGATCATCGAGATGGCGAATAACCGTTTTAACGGAAATCTTCCTTCTGATATTTCCGGGGATTCCCTCAGCATCCTAACCCTCTCCACTAACAACTTCGCCGGCAGGATCCCGCTGGAGCTCAAGAATCTCCAGAAACTGCAGACGCTTGCGCTCGACGCGAACCAGTTCGTTGGAGAGATTCCAGGGGAGGTTTTTGACTTGCCGGCGTTGATCAAGGTCAACTTGAGCGGCAACAACCTCACCGGTGAGATTCCGGAGTCGGTGATTCGCTGTGGTTCTCTGACGGCGGTTGATTTTAGCCGGAACATGCTCACCGGAGAAATTCCCAAGGGGATAAAAAGCCTCAGAGTTCTAAGCATCTTGAACCTCTCGCGCAACCACATCACCGGAACTGTCCCCGACGAGATTCGCTTCATGACGAGCCTCAACACGCTGGATCTCTCCAACAACAACTTCATTGGAAGAGTCCCCACGGGTGGCCAGTTCGTGGCCTTCAACGACAAGTCGTTTGCAGGGAACCCTAACCTCTGCTCCCCGCACCAGCCGTATTGTCCTTCCTCCGTCAACACTGCCTCTGGAAAAAGCCACAATCCTCTGAGTTCAAAATCAACTAAGGTAGTTATAATCGTGATCGCGATCTCCACGGCGGTGCTCCTGGCTATGGTGACGGTATACATTATGAGGAAGAGGAAGCACCAGAAAGAAATGTCGTGGAAGCTGACGGCGTTCCAGTCAACGCTGAAAATGAAGGCAGAGGAGGTGGTGGAATGCTTGAAGGAAGAGAACATCATTGGAAAAGGAGGAGCAGGAATCGTGTACCGCGGGACAACGCCGAAGGGAACGGAGGTAGCAATCAAGAGACTTGTGGGGCAAGGAAGTGGAAGAAACGATTACGGTTTCAAGGCGGAGATAGAGACGTTAGGGAAGATAAGGCACAGGAACATAATGAGGCTCTTGGGGTATGTGTCAAATAAGGACACGAACCTGTTGCTGTATGAGTACATGCCAAATGGAAGCTTGGGGGAGTGGCTGCATGGTGCGAAGGGAGGGCACCTCACGTGGGAAATGAGGTACCGCATTGCGGTGGAGGCTGCCAAGGGGCTCTGCTACTTGCACCATGATTGCTCCCCCTTGATCATTCACAGGGATGTTAAGTCCAATAATATCTTGCTTGATGAGAACTTTGAGGCACACGTGGCTGATTTTGGGCTCGCCAAGTTCTTGCAGGACCCTGGAGCGTCTCAGTCCATGTCCTCCATTGCTGGCTCCTACGGCTACATTGCTCCAGAGTACGCTTACACGCTGAAAGTGGACGAGAAGAGCGACGTATACAGCTTTGGAGTAGTGCTGTTGGAGCTGATCGTAGGAAGGAAGCCAGTGGGTGAGTTCGGAGATGGTGTTGACATCGTTGGATGGGTCAACAAGACCATGTCGGAGCTGTCTCAGCCGTCTGATGCGGCTTCCGTGTTGGCAGTGGTGGACCCCAGGCTCAATGGGTATCCATTGGGCAGCGTCATCCACATGTTCAACATAGCTATGATGTGTGTTAGAGAAATTGGCCATGCTAGGCCTACCATGAGGGAAGTTGTTCATATGCTCACTAATCCACCTCAATCTACTACCCATCATAACCTAATTAATCTCTAG 2979 0.5055 MRTSLCCSIILLSFVFIWLNNVTVTVLGSSFSDLDTLLKLKEAMKGSKAKPDALQDWKFSTSISAHCSFSGVTCDRQNLRVVALNVSFVPLFGSIPPEIGLLDKLESLTLSSDNLTKELPMELANLTSLKLLNISHNLFSGRFPGDITVAMTELETLDIYDNSFNGALPEEFVRLEKLRCLNLSGNYFSGEIPESYSEFESLEILNLATNSLTGKIPRSLVKLKKLKRLSLGYENSYSDVVPTEFGSFESLQLLDLSSCNLSGEIPPTLGALTHLHSLFLQMNNLTGTIPSQLSTMISLKSLDLSYNELTGEFPLTFSKLTNLTLINFFHNKLRGNIPSFVGDLPNLETFQVWGNNFSNVLPPNLGQNARFLYFDVTNNHFTGELPRDLCKSGRLRTFLATGNFFYGTIPEGIGGCVSLEKIRISDNFLQGQVPPGIFKLPAVQIIEMANNRFNGNLPSDISGDSLSILTLSTNNFAGRIPLELKNLQKLQTLALDANQFVGEIPGEVFDLPALIKVNLSGNNLTGEIPESVIRCGSLTAVDFSRNMLTGEIPKGIKSLRVLSILNLSRNHITGTVPDEIRFMTSLNTLDLSNNNFIGRVPTGGQFVAFNDKSFAGNPNLCSPHQPYCPSSVNTASGKSHNPLSSKSTKVVIIVIAISTAVLLAMVTVYIMRKRKHQKEMSWKLTAFQSTLKMKAEEVVECLKEENIIGKGGAGIVYRGTTPKGTEVAIKRLVGQGSGRNDYGFKAEIETLGKIRHRNIMRLLGYVSNKDTNLLLYEYMPNGSLGEWLHGAKGGHLTWEMRYRIAVEAAKGLCYLHHDCSPLIIHRDVKSNNILLDENFEAHVADFGLAKFLQDPGASQSMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELIVGRKPVGEFGDGVDIVGWVNKTMSELSQPSDAASVLAVVDPRLNGYPLGSVIHMFNIAMMCVREIGHARPTMREVVHMLTNPPQSTTHHNLINL* 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0779 992 Gene3D Ribonuclease Inhibitor 32 150 IPR032675 -
Amo13g0779 992 SMART serkin_6 702 977 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g0779 992 Gene3D Transferase(Phosphotransferase) domain 1 779 989 - -
Amo13g0779 992 ProSitePatterns Serine/Threonine protein kinases active-site signature. 823 835 IPR008271 GO:0004672|GO:0006468
Amo13g0779 992 SUPERFAMILY Protein kinase-like (PK-like) 689 977 IPR011009 -
Amo13g0779 992 Pfam Leucine rich repeat 274 333 IPR001611 GO:0005515
Amo13g0779 992 Pfam Leucine rich repeat 201 261 IPR001611 GO:0005515
Amo13g0779 992 Gene3D Ribonuclease Inhibitor 238 341 IPR032675 -
Amo13g0779 992 Gene3D Ribonuclease Inhibitor 355 632 IPR032675 -
Amo13g0779 992 PANTHER RECEPTOR PROTEIN KINASE CLAVATA1 8 984 - -
Amo13g0779 992 SUPERFAMILY L domain-like 375 626 - -
Amo13g0779 992 PRINTS Leucine-rich repeat signature 583 596 - -
Amo13g0779 992 PRINTS Leucine-rich repeat signature 299 312 - -
Amo13g0779 992 Pfam Protein tyrosine and serine/threonine kinase 703 975 IPR001245 GO:0004672|GO:0006468
Amo13g0779 992 SUPERFAMILY L domain-like 65 389 - -
Amo13g0779 992 PANTHER UNNAMED PRODUCT 8 984 - -
Amo13g0779 992 SMART LRR_typ_2 296 319 IPR003591 -
Amo13g0779 992 SMART LRR_typ_2 583 606 IPR003591 -
Amo13g0779 992 SMART LRR_typ_2 248 272 IPR003591 -
Amo13g0779 992 SMART LRR_typ_2 487 511 IPR003591 -
Amo13g0779 992 SMART LRR_typ_2 559 582 IPR003591 -
Amo13g0779 992 SMART LRR_typ_2 151 175 IPR003591 -
Amo13g0779 992 SMART LRR_typ_2 344 368 IPR003591 -
Amo13g0779 992 ProSiteProfiles Protein kinase domain profile. 702 990 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo13g0779 992 Gene3D Phosphorylase Kinase; domain 1 665 778 - -
Amo13g0779 992 Gene3D Ribonuclease Inhibitor 151 237 IPR032675 -
Amo13g0779 992 Pfam Leucine rich repeat N-terminal domain 32 75 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0779 Amo-Chr13 9674539 9679212 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0779 30 990 Receptor kinase-like Gene Family AT1G75820 61.019 0.0 1183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Amo13g0779 PK_Tyr_Ser-Thr 1.9e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0779 K00924 - gmx:732661 1424.45