Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0776 ATGGCGTCTTCAAGTGGAACATCTTCAGGTTCATCAACTCTTGTGCTTCAGAACTCGGGTTCTGAGGAGGAGTTGCAGGCTTTGATGGATCAAAGGAAGAGGAAGAGGATGATATCAAACCGCGAATCGGCGAGGAGGTCGAGGATGAGGAAGCAGAAGCACCTTGACGATCTTGTTTCTCAGGTGGCAACGTTAAGGAAGGAGAATCAACAGATCCTCACAAGCGTCAACATCACTACGCAGCAATATCTGAATGTTGAGTCGGAGAATTCAGTTCTTAGGGCTCAGGTTGAGGAACTTAGTCACAGGTTGGACTCACTCAATGAGATCATTGACTTCTTGAATGCCAATAACACTAGCAATGGTGTTTATGGTTCTTCTTCAGGAGGGTCATTCATGGAGCCAGTTAATAGCTTCTTCAACAACTCTTTGAACATGGCCTTTCTCAACCAACCCATTATGGCCTCAGCATCCGACATGTTACAATACTGA 492 0.4553 MASSSGTSSGSSTLVLQNSGSEEELQALMDQRKRKRMISNRESARRSRMRKQKHLDDLVSQVATLRKENQQILTSVNITTQQYLNVESENSVLRAQVEELSHRLDSLNEIIDFLNANNTSNGVYGSSSGGSFMEPVNSFFNNSLNMAFLNQPIMASASDMLQY* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0776 163 MobiDBLite consensus disorder prediction 1 25 - -
Amo13g0776 163 SUPERFAMILY Leucine zipper domain 32 84 IPR046347 GO:0003700|GO:0006355
Amo13g0776 163 MobiDBLite consensus disorder prediction 26 53 - -
Amo13g0776 163 Coils Coil 83 117 - -
Amo13g0776 163 Gene3D - 30 85 - -
Amo13g0776 163 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 30 93 IPR004827 GO:0003700|GO:0006355
Amo13g0776 163 PANTHER BZIP TRANSCRIPTION FACTOR 44 1 160 - -
Amo13g0776 163 CDD bZIP_plant_GBF1 33 83 IPR045314 GO:0003700|GO:0006355
Amo13g0776 163 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 35 50 IPR004827 GO:0003700|GO:0006355
Amo13g0776 163 Pfam bZIP transcription factor 32 89 IPR004827 GO:0003700|GO:0006355
Amo13g0776 163 MobiDBLite consensus disorder prediction 1 53 - -
Amo13g0776 163 PANTHER BZIP TRANSCRIPTION FACTOR 1 160 - -
Amo13g0776 163 SMART brlzneu 28 92 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0776 Amo-Chr13 9625663 9627276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0776 26 163 bZIP Transcription Factor Family AT4G34590 60.000 4.54e-49 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Amo13g0776 bZIP_1 1.3e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0776 K25786 - gmx:547956 223.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0776 13 9625663 9627276 Amo13g0776 13 9625663 9627276 ECH
Amo13g0776 13 9625663 9627276 Amo17g2225 17 113698471 113700064 ECH