Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0767 ATGAACTCATCTTCACACAACCGGTCGAATAGCGTGCCTTCTGCGCCACATCCTTTGATATCACAATATGAGGAGTGTTTCCAGAGGTTGAAGGCTTCTGAAGCTGCCTCTTCCTCATCAACAAGCTCTAAACTCAATGGTTTGCATGCTTTGTATGAATGCACAAATAAGGTACTTCAATTGCAAACTGTGCAGCAAGAACTCAGCCATGAATCTTGCAAGAATTCGGTTGATGAATTGCTAGAAGGGTCTCTGATGCTCTTGGATACTTGTGCTACTGTCAAAGATGTCCTGCTACAATCATCAGAAAGCATACAAGGACTTCAATCGGCCATTCGCAGAAAGAGATGGGGCGAATCAGCATTGAAATCCGAGGGTGATAAATACTTGTCCTTAAGGAAGAAGGCGAAAAAGACAATTCAAAATGCCTTAGAGAGTTTCAAGGGATTCAAGAAAGGCTTCAYTATTAKTCCAAYTSCCTCAAACACTCAAGATGAATTTGTGTCCATGATTAGAAGCTTAAAAGAAGCAGAACTCTTCACACTGATCCAATTAGAGTCTTTGTTATCTTTCGTCTATGGCCCGAAGGCGAAACCAAAGATGAGCAGTTGGACAGTAGTCTCCAAGTTCATGCAGCCTAAGAGAGTATGCTGTGATTCAGACCAATCAAACTCGAATGAATTCGAGAAGGTCGATGGAGACTTGCAGTGTCTCTTTCAGAAACATAGCAGTGTTGTGTCTGTTCAGAATTTCCAAAATTCTATGGAGAATTTAGAGTTATGTATTAAGGGTCTTGACTCAGGAATTGAGCAACTTGAAAGGCAACTTATTAGAACCAGAATGCATGCACAGCAACAAAAGATGCTCTACTTCACACCAAAGAGTGCAGCCGCCAGCTTCAATCGATCATCCGGCGAAAAAAGGCAGGGCCAAATTAATGGTGACAAAATCAATCTTCAAAGCCTTGGAAAATTTAAAGGTCACAATGCAAATAAATGCAACCGTTCTATGATCAACAAAGAATATCAAACAGTTAACTCGTTGAAAGAAATTCAAGTTACTAGTTTTGCCATATTCGAATCCCTTTTGAACTTTATTTCTGGATCTACACAATCGAAACGTGGCGGTTGGTCGTTGGTTTCGAAACTGATGAACAACAAAAGGATGTTATCCAATACAGAGGACAATAATGAATTTGCAAAAGTGGATGATGCATTGCAGTTCTTTGCATTCAACATGGGAAACATCGATGACTTGCAGAACAAGTTACTAAGATTGGGGTCATGCATTCAAGATCTTGAAGAAGGACTTGACTCATTGTTTAGGCGCTTAATCAAAATCAGAATTGCTCCAAAGAAGGATAAGGCTCCTCCACCATCTTCTAAACCCGCCAAATCTGGTGGTGGCAAGCAGAAGAAGAAGAAGTGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAACAACCAGGTGCTGTTTGATCAGGGTACTTATGACAAGCTCCTCTCTGAAGCTCCCAAATTCAAGCTCATCACTCCTTCCATTCTCTCTGATCGTTTGAGGATTAATGGATCGCTTGCAAGGAGGGCTATAAGAGAGTTGATGGCTAGAGGGTCAATTAGACTGATCTCTCTTCATCTTCGCAGCAACAGCCTGCCATCGGCGCAACACCCTTTTGGATCGCAATGTGAGGAGCATTGCCGGAGATTGAAGGACTCTGAGGTCACTTCTTGTTCTTCATCATCTTCGATAATCAAGAATCTTGATATCTTGCAAGATCTGCATGAGTGCATTAACAATCTGCTCCAATTACCAAACTCACAACAAGATTTGGAAGGAGAATGCATCCATGAACTATTAGATGGATCTCTAAGGCTCTTGGAAATATTTAGTATGGTTCAAGATTGGCTAGTGCAATCAAGGGAAAGCGTGTGTGAGCTCGAGTCAGTTATTCGCAGGCGAAGTAAAGCCAAAAATGGAATCTCAATTGAGGTTGGAAAATACATTGCATCAAGGAAACAGATCAAGAAGGCAATAATTCAGAAAGCCTTGACAAACSTGAAAGGATTCAAGAAGGATATTATGGTTGCTTCTTCCTCAAGCAAAGACAACGCGACTTTAGCCATCTTAGAAGAAGCAGAATTAGTCACATTGAACTCATTGGAATCTTTGTTGTTGTTCATCAATGGTCCAAAGGAACAAGAAAGYCAGGGAAAGTGGAAAGTGATGCCCAAATTGTTGAAGTCTAATAGAGTTGAATCATGTGACACAAATGAATTTGAAAAGGTTGATGCAACTTTGAAGATTCTCATGAATCACAAGCCTTCCTTAATTGAGAATCTTCACAGCCACATGGAAAATTTAGTGATGTGCATTCAGGATYTAGAAGCAGGCGCGGAACGCCTTTCGAGGCAACTAATTAGAACTAGATTTTTCATGAATATGATTATGGAAAAGAGAAGCTTTTCTGARTTCATGTCAGAGMTAGTAGCTCTGGTTGATGAGGTTGCTTCATTTGCTATGAATCCTGAAGTTGAGATAGATGCTTTTACCGAGTTTGCCATGTTGGTTGAGAAATTGGCACCAATTTTCAGTGATTTGAGTGACAAAATCACAGTTATAGAAAACAAGCCATCCATCAGAAAATCTTTGGAATCGATYGAAACTTCGCTTAGCCGTGCTAAAGCTTTGAAAAAAAGTTCTAGCTTGAAAGACCCTAGCAAACATATTGAGGACACAACACATGATATTGGTCGATCACTAGGCCTATTGCTCCTTGAATTGTCCACAGATTTTAGAGAAAAGGTTGGTACATTGCAAAAACAGTTTATGAATGCAAGATTTGGTGGGAACATGAGCCTATCTTCAAGTCCAGTATCATTAGAGTTTGCAAATGATGTGTATGGTGGAGGGGAAATAGAAGAGGAAATAGTCAATGTTACTATAGAAGATGTTGTATTGCAACTTAAGAATGGTAAYGATGAAGAATTTGCAGTTGCTCTTTGGAGACTAAAGGAGTTCATCAGGGATGAGAAGCTGGAAAGTTGTTTGGTTAATGAGGAAGCTGTTGTTGCTGTTCTGTTAAATAGACTGCGTTCGTGTAAGGCAGACAATAGACTTAACATCATTCAATTGTTACGAAATATGGCTTCRGGAAATGATGAWACAAAGGAGAAGATGGCAGAAACCGAGTTTTTATCAGCAGTGGTGAAGTCTCTAACAAGAGATGCAGAAGAGAGGAGGGAAGCAGTGGGACTGCTGCTAGAACTCTCTGATCTTCCTGCAGTTCGACGGCAAATTGGAAGAATTCAGGGGTGCATTGTAATGTTAGTCTCTATCCTTAATGGAAGCGACCCCATCGCTTCGCAAGGTGCAGCCAAGTTGTTGGATATRTTGTCCAGTAATACTCAAAATGCACTTCACATGGCTGAGGCTGGTTACTTTAAGCCTCTAGTGCACTATTTGAAGAAAGGCTCTGACATGAACAAGATCCTTATGGCAACAGCACTTTCTAGGTTGGTGCTAACTGATCACAGCAAACTTTCCCTCGGCRAAGATGGGGCAATCGAGCCCCTTGTCAACATGTTTCACACTGGCAAACTTGAGTCCAAGTTGTCTGCTCTAAATGCCCTTCAAAATCTTTCCAGTGTGACAGAAAATGTGCAACTTCTAATCAGGTCTGGGATTGCAGGATCATTRCTGCAGCTTCTTTTTTCAGTAACATCTGTGCTAATGACTCTTAGGGAGCCAGCATCTGCTATTCTTGCAAGAATTGCTCAGTCRGAATCTATTATTGTTAATCAGGATGTTGCTCAGCAGATGCTCTCACTCTTGAACCTTTCCAGCCCAATAATTCAAGGCCATCTCTTGGAAGCTCTAAGTAGCATCGCTGCGCATCCTCGCGCATCTAAAGTGAGAAGAAAAATGAAAGAAAAAGGAGCACTTCAGCTAATTTTGCCTTTTCTGAAGGAAACTAACACTACAACAAGAAGCAAGGCCCTTAATTTGCTCTATACTCTTTCCAAAGATCTTACAGATGAGTTGAGTGAACATCTTGATGAAGCTCATCTTATTCACATTGTTAATATTGTCTCATCATCATCATCAGATAGTGAAAAGGCTGCAGCTCTTGGCATACTGAGTAATCTTCCAGTTAGTGATAAAAAGGTGACTGATATTCTGAAGAAAGCAAATTTGTTGTCTATTTTAATATCCAATATGGCTTCGAGCACTGGAAGTAACTCGCCTGTGACAAGAACCTTAGCTGAAATTGTTGCTTGTGTTATAGTTAGGTTCACAAATCCTTCTGACAAGAAACTGCAGCTCTATTCAGCTGAACAAGGGGTGATTCCTTTGCTTGTGAAACTTCTCTCAAGTGGTTCATCAATTGCAAAATTCAGAGCTGCGACYGCTTTGGCTCAGCTATCACAAAATTCTCTGTCCCTCAGGAGGAGTAGGAAGTCAAAGTGGTTTTGTGTAAATCCATCAGTAGAAGCATATTGTGAAGTGCATGATGGTTATTGCTATGTGAACTCCACATTTTGTCTGGTCAAGGCTGGTGCTGTTYCGGCACTTATCAAAATACTTGAAGATAAGGAGTGGGAAGCAGTTGAGGCTGCTYTGATTGCCCTTTCAACTCTTTTGCAAGACGAAATCTGTGAAGGCGGCATCAATTGWATAGCCAAGAATTCAGGTGTGCAAGCTATTATCAAAATTTTAGAAGCAGGTGATGTGAAGGTTCAAGAAAAAGCACTATGGATGTTGGACAGAATATTCAGGATTGAAGAGCACAGAGTAAAATATGGAGAATCAGCTCAGTCAACTGTTGCAAAAGTTTTGGCAGAGTTGGAGCTCCTGCAAGTTCAATCAAAGATTGCAGCCATTATAACAAATACTAAGAGCTCGCAGCATCTTCGGTCCAACAGCTTGCCTTCTTTGTCAAGCCACCCCTTACTTGTCATCAACTCATCATCTTCAATAGACAAAAGCTCAATGGATTGCAGGATTTACACGAATGCACCAGTAAGTTACTTTAATTACCAATCATCAACAATTCTTAGCATGAGAATATGA 5067 0.406 MNSSSHNRSNSVPSAPHPLISQYEECFQRLKASEAASSSSTSSKLNGLHALYECTNKVLQLQTVQQELSHESCKNSVDELLEGSLMLLDTCATVKDVLLQSSESIQGLQSAIRRKRWGESALKSEGDKYLSLRKKAKKTIQNALESFKGFKKGFXIXPXXSNTQDEFVSMIRSLKEAELFTLIQLESLLSFVYGPKAKPKMSSWTVVSKFMQPKRVCCDSDQSNSNEFEKVDGDLQCLFQKHSSVVSVQNFQNSMENLELCIKGLDSGIEQLERQLIRTRMHAQQQKMLYFTPKSAAASFNRSSGEKRQGQINGDKINLQSLGKFKGHNANKCNRSMINKEYQTVNSLKEIQVTSFAIFESLLNFISGSTQSKRGGWSLVSKLMNNKRMLSNTEDNNEFAKVDDALQFFAFNMGNIDDLQNKLLRLGSCIQDLEEGLDSLFRRLIKIRIAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNQVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRELMARGSIRLISLHLRSNSLPSAQHPFGSQCEEHCRRLKDSEVTSCSSSSSIIKNLDILQDLHECINNLLQLPNSQQDLEGECIHELLDGSLRLLEIFSMVQDWLVQSRESVCELESVIRRRSKAKNGISIEVGKYIASRKQIKKAIIQKALTNXKGFKKDIMVASSSSKDNATLAILEEAELVTLNSLESLLLFINGPKEQESQGKWKVMPKLLKSNRVESCDTNEFEKVDATLKILMNHKPSLIENLHSHMENLVMCIQDLEAGAERLSRQLIRTRFFMNMIMEKRSFSEFMSEXVALVDEVASFAMNPEVEIDAFTEFAMLVEKLAPIFSDLSDKITVIENKPSIRKSLESIETSLSRAKALKKSSSLKDPSKHIEDTTHDIGRSLGLLLLELSTDFREKVGTLQKQFMNARFGGNMSLSSSPVSLEFANDVYGGGEIEEEIVNVTIEDVVLQLKNGNDEEFAVALWRLKEFIRDEKLESCLVNEEAVVAVLLNRLRSCKADNRLNIIQLLRNMASGNDXTKEKMAETEFLSAVVKSLTRDAEERREAVGLLLELSDLPAVRRQIGRIQGCIVMLVSILNGSDPIASQGAAKLLDXLSSNTQNALHMAEAGYFKPLVHYLKKGSDMNKILMATALSRLVLTDHSKLSLGXDGAIEPLVNMFHTGKLESKLSALNALQNLSSVTENVQLLIRSGIAGSLLQLLFSVTSVLMTLREPASAILARIAQSESIIVNQDVAQQMLSLLNLSSPIIQGHLLEALSSIAAHPRASKVRRKMKEKGALQLILPFLKETNTTTRSKALNLLYTLSKDLTDELSEHLDEAHLIHIVNIVSSSSSDSEKAAALGILSNLPVSDKKVTDILKKANLLSILISNMASSTGSNSPVTRTLAEIVACVIVRFTNPSDKKLQLYSAEQGVIPLLVKLLSSGSSIAKFRAATALAQLSQNSLSLRRSRKSKWFCVNPSVEAYCEVHDGYCYVNSTFCLVKAGAVXALIKILEDKEWEAVEAALIALSTLLQDEICEGGINXIAKNSGVQAIIKILEAGDVKVQEKALWMLDRIFRIEEHRVKYGESAQSTVAKVLAELELLQVQSKIAAIITNTKSSQHLRSNSLPSLSSHPLLVINSSSSIDKSSMDCRIYTNAPVSYFNYQSSTILSMRI* 1689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0767 1688 Pfam Protein BPS1 44 281 IPR004320 GO:0048364|GO:0048367
Amo13g0767 1688 Pfam Protein BPS1 586 808 IPR004320 GO:0048364|GO:0048367
Amo13g0767 1688 Pfam Protein BPS1 321 449 IPR004320 GO:0048364|GO:0048367
Amo13g0767 1688 SUPERFAMILY ARM repeat 1163 1594 IPR016024 -
Amo13g0767 1688 Pfam S25 ribosomal protein 456 545 IPR004977 -
Amo13g0767 1688 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 815 1622 - -
Amo13g0767 1688 Gene3D - 1166 1350 IPR011989 -
Amo13g0767 1688 Coils Coil 255 275 - -
Amo13g0767 1688 Gene3D - 1351 1487 IPR011989 -
Amo13g0767 1688 SMART arm_5 1133 1173 IPR000225 GO:0005515
Amo13g0767 1688 SMART arm_5 1435 1475 IPR000225 GO:0005515
Amo13g0767 1688 SMART arm_5 1300 1340 IPR000225 GO:0005515
Amo13g0767 1688 SMART arm_5 1507 1547 IPR000225 GO:0005515
Amo13g0767 1688 SMART arm_5 1551 1591 IPR000225 GO:0005515
Amo13g0767 1688 SMART arm_5 1051 1090 IPR000225 GO:0005515
Amo13g0767 1688 SMART arm_5 1174 1214 IPR000225 GO:0005515
Amo13g0767 1688 MobiDBLite consensus disorder prediction 452 482 - -
Amo13g0767 1688 Gene3D - 469 548 - -
Amo13g0767 1688 SUPERFAMILY ARM repeat 979 1236 IPR016024 -
Amo13g0767 1688 Gene3D - 970 1165 IPR011989 -
Amo13g0767 1688 Gene3D - 1504 1637 IPR011989 -
Amo13g0767 1688 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN-LIKE 815 1622 - -
Amo13g0767 1688 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1185 1227 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0767 Amo-Chr13 9499643 9519008 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0767 990 1612 U-box Gene Family AT1G76390 29.129 3.07e-47 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0767 K08332 - gmx:100791453 1055.43