Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0744 ATGAATATGATTATGGAAAAGAGAAGCTTTTCTGAGTTCATGTCAGAGCTAGTAGCTCTGGTTGATGAGGTTGCTTCATTTGCTATGAATCCTGAAGTTGAGATAGATGCTTTTACCGAGTTTGCCATGTTGGTTGAGAAATTGGCACCAATTTTCAGTGATTTGAGTGACAAAATCACAGTTATAGAAAACAAGCCATCCATCAGAAAATCTTTGGAATCGATCGAAACTTCGCTTAGCCGTGCTAAAGCTTTGAAAAAAAGTTCTAGCTTGAAAGACCCTAGCAAACATATTGAGGACACAACACATGATATTGGTCGATCACTAGGCCTATTGCTCCTTGAATTGTCCACAGATTTTAGAGAAAAGGTTGGTACATTGCAAAAACAGTTTATGAATGCAAGATTTGGTGGGAACATGAGCCTATCTTCAAGTCCAGTATCATTAGAGTTTGCAAATGATGTGTATGGTGGAGGGGAAATAGAAGAGGAAATAGTCAATGTTACTATAGAAGATGTTGTATTGCAACTTAAGAATGGTAATGATGAAGAATTTGCAGTTGCTCTTTGGAGACTAAAGGAGTTCATCAGGGATGAGAAGCTGGAAAGTTGTTTGGTTAATGAGGAAGCTGTTGTTGCTGTTCTGTTAAATAGACTGCGTTCGTGTAAGGCAGACAATAGACTTAACATCATTCAATTGTTACGAAATATGGCTTCAGGAAATGATGAGACAAAGGAGAAGATGGCAGAAACCGAGTTTTTATCAGCAGTGGTGAAGTCTCTAACAAGAGATGCAGAAGAGAGGAGGGAAGCAGTGGGACTGCTGCTAGAACTCTCTGATCTTCCTGCAGTTCGACGGCAAATTGGAAGAATTCAGGGGTGCATTGTAATGTTAGTCTCTATCCTTAATGGAAGCGACCCCATTGCTTCGCAAGGTGCAGCCAAGTTGTTGGATATGTTGTCCAGTAATACTCAAAATGCACTTCACATGGCTGAGGCTGGTTACTTTAAGCCTCTAGTGCAGTATTTGAAGAAAGGCTCTGACATGAACAAGATCCTTATGGCAACAGCACTTTCTAGGTTGGTGCTAACAGATCACAGCAAACTTTCCCTCGGCGAAGATGGGGCAATCGAGCCCCTTGTCAACATGTTTCACACTGGCAAACTTGAGTCCAAGTTGTCTGCTCTAAATGCCCTGCAAAATCTTTCCAGTGTGACAGAAAATGTGCAACTTCTAATCAGGTCTGGGATTGCAGGATCATTACTGCAGCTTCTTTTTTCAGTAACATCTGTGCTAATGACTCTTAGGGAGCCAGCATCTGCTATTCTTGCAAGAATTGCTCAGTCGGAATCTATTATTGTTAATCAGGATGTTGCTCAGCAGATGCTCTCACTCTTGAACCTTTCCAGCCCAATAATTCAAGGCCATCTCTTGGAAGCTCTAAGTAGCATCGCTGCGCATCCTCGCGCATCTAAAGTGAGAAGAAAAATGAAAGAAAAAGGAGCACTTCAGCTAATTTTGCCTTTTCTGAAGGAAACTAACACTACAACAAGAAGCAAGGCCCTTAATTTGCTCTATACTCTTTCCAAAGATCTTACAGATGAGTTGAGTGAACATCTTGATGAAGCTCATCTTATTCACATTGTTAATATTGTCTCATCATCATCATCAGATAGTGAAAAGGCTGCAGCTCTTGGCATACTGAGTAATCTTCCAGTTAGTGATAAAAAGGTGACTGATATTCTGAAGAAAGCAAATTTGTTGTCTATTTTAATATCCAATATGGCTTCGAGCACTGGAAGTAACTCGCCTGTGACAAGAACCTTAGCTGAAATTGTTGCTTGTGTTATAGTTAGGTTCACAAATCCTTCTGACAAGAAACTGCAGCTCTATTCAGCTGAACAAGGGGTGATTCCTTTGCTTGTGAAACTTCTCTCAAGTGGTTCATCAATTGCAAAATTCAGAGCTGCGACCGCTTTGGCTCAGCTATCACAAAATTCTCTGTCCCTCAGGAGGAGTAGGAAGTCAAAGTGGTTTTGTGTAAATCCATCAGTAGAAGCATATTGTGAAGTGCATGATGGTTATTGCTATGTGAACTCCACATTTTGTCTGGTCAAGGCTGGTGCTGTTCCGGCACTTATCAAAATACTTGAAGATAAGGAGTGGGAAGCAGTTGAGGCTGCTTTGATTGCCCTTTCAACTCTTTTGCAAGACGAAATCTGTGAAGGCGGCATCAATTGCATAGCCAAGAATTCAGGTGTGCAAGCTATTATCAAAATTTTAGAAGCAGGTGATGTGAAGGTTCAAGAAAAAGCACTATGGATGTTGGACAGAATATTCAGGATTGAAGAGCACAGAGTAAAATATGGAGAATCAGCTCAGGTTTTTCTTATTGATTTGGCGCAGACGTGTGATTCTCGATTGAAGTCAACTGTTGCAAAAGTTTTGGCAGAGTTGGAGCTCCTGCAAGTTCAATCAAGTTATTTCTGA 2490 0.408 MNMIMEKRSFSEFMSELVALVDEVASFAMNPEVEIDAFTEFAMLVEKLAPIFSDLSDKITVIENKPSIRKSLESIETSLSRAKALKKSSSLKDPSKHIEDTTHDIGRSLGLLLLELSTDFREKVGTLQKQFMNARFGGNMSLSSSPVSLEFANDVYGGGEIEEEIVNVTIEDVVLQLKNGNDEEFAVALWRLKEFIRDEKLESCLVNEEAVVAVLLNRLRSCKADNRLNIIQLLRNMASGNDETKEKMAETEFLSAVVKSLTRDAEERREAVGLLLELSDLPAVRRQIGRIQGCIVMLVSILNGSDPIASQGAAKLLDMLSSNTQNALHMAEAGYFKPLVQYLKKGSDMNKILMATALSRLVLTDHSKLSLGEDGAIEPLVNMFHTGKLESKLSALNALQNLSSVTENVQLLIRSGIAGSLLQLLFSVTSVLMTLREPASAILARIAQSESIIVNQDVAQQMLSLLNLSSPIIQGHLLEALSSIAAHPRASKVRRKMKEKGALQLILPFLKETNTTTRSKALNLLYTLSKDLTDELSEHLDEAHLIHIVNIVSSSSSDSEKAAALGILSNLPVSDKKVTDILKKANLLSILISNMASSTGSNSPVTRTLAEIVACVIVRFTNPSDKKLQLYSAEQGVIPLLVKLLSSGSSIAKFRAATALAQLSQNSLSLRRSRKSKWFCVNPSVEAYCEVHDGYCYVNSTFCLVKAGAVPALIKILEDKEWEAVEAALIALSTLLQDEICEGGINCIAKNSGVQAIIKILEAGDVKVQEKALWMLDRIFRIEEHRVKYGESAQVFLIDLAQTCDSRLKSTVAKVLAELELLQVQSSYF* 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0744 829 Gene3D - 692 823 IPR011989 -
Amo13g0744 829 SMART arm_5 364 404 IPR000225 GO:0005515
Amo13g0744 829 SMART arm_5 490 530 IPR000225 GO:0005515
Amo13g0744 829 SMART arm_5 741 781 IPR000225 GO:0005515
Amo13g0744 829 SMART arm_5 697 737 IPR000225 GO:0005515
Amo13g0744 829 SMART arm_5 241 280 IPR000225 GO:0005515
Amo13g0744 829 SMART arm_5 323 363 IPR000225 GO:0005515
Amo13g0744 829 SMART arm_5 625 665 IPR000225 GO:0005515
Amo13g0744 829 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 375 417 IPR000225 GO:0005515
Amo13g0744 829 Gene3D - 453 674 IPR011989 -
Amo13g0744 829 Gene3D - 275 452 IPR011989 -
Amo13g0744 829 Gene3D - 159 267 IPR011989 -
Amo13g0744 829 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 5 829 - -
Amo13g0744 829 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN-LIKE 5 829 - -
Amo13g0744 829 SUPERFAMILY ARM repeat 351 784 IPR016024 -
Amo13g0744 829 SUPERFAMILY ARM repeat 169 427 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0744 Amo-Chr13 9183518 9186913 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0744 180 829 U-box Gene Family AT1G76390 28.921 1.82e-50 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0744 K08332 - gmx:100791453 1100.5