Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0724 ATGTTGCATTGTGTAAACATGACAGTGTTGGAGAGGCAGCAAGCAAGAAWCAAGAAATGCATTCAACAAGATCTTCAAGACAATGGATCCTCGTTATTTGACGTCTTCTCTGATGATTATTCCTCCCTAATTCACATGCCTCCTGCTCCTTCTTCTTCTTCCGCCATTTCCTCCTTTGTCTCTCCCAAGAAGAGAAAGTCTGAAAGCCACAAGGTGGTTGTTGCTCAACAAAGTCATACGAAGAAGGAGAAAAGAGTGAAAGTGAGTGCGGAAGAAGACTCATCCAAAATGAGTGAGCAAATTACGAACAAGGACGAAGTAGCTTCTGCTGAGAATTCCATTAAAGGATCTACTTCGGAGCCTCACAATAACAAACCTGACTACATTCATGTCCGAGCTCGCCGCGGCCAAGCCACTGATAGTCACAGCCTTGCAGAAAGAGTTAGAAGGGAAAAGATTAGCGAGAGAATGAAGTATTTGCAAGATTTGGTTCCGGGATGCAACAAGATTACAGGAAAAGCTGGAATGCTTGATGAAATCATAAACTATGTTCAGTCTCTTCAAMGACAAGTTGAGTTCTTGTCTATGAAATTAGCTGCTGTAAACCCAAGACTTGAACTCAACGTTGATGATCTCTTTGCCAAAGAGGTATTTCCTGCTTGTGCTCCAAATTTTGAAGGCATTGGAATGGGATCATCAGAGATGACTAATAACCCTGCTGCATATCTTGACTTCAATTCAGTTCAACAACTTGTATCATGTTCCAATGGATTAATCAACAACATTGGCATGAATATGACCCCTTCACCAGACATGGGTCTTAGGAAAACCATTGCTGCACCCCTCTCTGTGTCTTTACCAGAAACATTTCTTGACTCATCATCTTGTTTCAATCAAGTTTTACCTCCTTCAATTTGGGAAGGCGAATTCCAAATCCAAAACCTTTACAATGTGGCTTTTGATCAACCTAGAACATCATCTTTTCCACCTTCTCACCCATTTACAGGTTTAGTGGAAGCTAGTAATCTAAAGATGGAGATGGATATGTAG 1050 0.4114 MLHCVNMTVLERQQARXKKCIQQDLQDNGSSLFDVFSDDYSSLIHMPPAPSSSSAISSFVSPKKRKSESHKVVVAQQSHTKKEKRVKVSAEEDSSKMSEQITNKDEVASAENSIKGSTSEPHNNKPDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLELNVDDLFAKEVFPACAPNFEGIGMGSSEMTNNPAAYLDFNSVQQLVSCSNGLINNIGMNMTPSPDMGLRKTIAAPLSVSLPETFLDSSSCFNQVLPPSIWEGEFQIQNLYNVAFDQPRTSSFPPSHPFTGLVEASNLKMEMDM* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0724 349 Gene3D - 134 210 IPR036638 GO:0046983
Amo13g0724 349 MobiDBLite consensus disorder prediction 125 144 - -
Amo13g0724 349 MobiDBLite consensus disorder prediction 67 144 - -
Amo13g0724 349 MobiDBLite consensus disorder prediction 101 124 - -
Amo13g0724 349 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 61 327 IPR024097 GO:0006355
Amo13g0724 349 SMART finulus 143 193 IPR011598 GO:0046983
Amo13g0724 349 MobiDBLite consensus disorder prediction 67 100 - -
Amo13g0724 349 CDD bHLH_AtBPE_like 127 212 - -
Amo13g0724 349 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 137 187 IPR011598 GO:0046983
Amo13g0724 349 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 135 204 IPR036638 GO:0046983
Amo13g0724 349 Pfam Helix-loop-helix DNA-binding domain 141 188 IPR011598 GO:0046983
Amo13g0724 349 PANTHER TRANSCRIPTION FACTOR BHLH63-LIKE 61 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0724 Amo-Chr13 8899020 8901743 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0724 49 316 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 42.373 1.31e-57 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo13g0724 HLH 1.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0724 - - gsj:114373950 353.984