Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0659 ATGCAGATGCATCACCGTCATCATCCTAATTCAACCACCATCATGCCACCTTCTTCTTCTCATCATTGGATATGGCCTCCAACACCATCTCCATCTCCATCTCCATCTCCATCCGCCACCTTCACCAAGTCAACGCTGCCGCCACCGTCACCTTCTAAGTCTCCGGTGGACTTCAGCCCTCCCCTCATAGCAATGGTTGTTGTCATCGCCGCCGCCTTCCTCCTCGTTACATACTCCCGTCTCATAGCCCGCCACCTCACTCCTCCACTCCACCGCCTCATAAGACGCTTCCGCCGTCGCCGCCGCACTCATTCCTTCCTCCCTTCCTCCTCCGGCGACCTAGACTCCCTCCCTTACTACTACGACTCCCCCTTCGACCCTCATATCCCACCCTCCTCCTTCTCGCCTTACGGCCTCGACGACTCCGTCATCAAAACCATCCCTTTCTCCCTTTACGCCGCCCTATACGCCGGCGAACTCAACAGCACCTCCTCTCGCCGTTCATCTTCACGCCGCGACTGCGCCGTTTGCCTCTTCGAATTCGAAGACGATGATTACGTTCGAACCTTGCCTCTTTGCTCACACACCTTCCATGTTGATTGCATCGATGCTTGGCTTCGTTCCCACGCAAACTGCCCTCTCTGCCGCGCCGGGGTTCTCTCCGCCGCCTCGCCGTTTACTCCCATGTTCGCCGCTAGGATTCGACCAAGTCTCGACGACGATGCCATCTTCCACCGGATAGCGGCGGAGCACACTCCGACTCCGCCGGAGGACTATCGTCATGCTACGACGGCGGTTTCGGCGGCGCCGGAGATTACCGTGGAAGTTCCCGAGGAGGGGTTCAACGGGAGGGACTTTCTATTGAAACGTTCTTATTCGTTTGGGTTCGAAAGGAGCTTGGCGTCGGAGAGGATGTTGGTGATGGAGCCCGCGACGGCGTCCCCGTGGCGGTACCGGAGAGGAGGGAGCAGCAGCAGTTTCTGGAGCAAGAGACCTTCGCCGTTTGGGTCTATTGGGAAGCCGAGGGTGTTCTCTTTCAGATACTACAGAGGGATGAAGTCACCGTTTTTCCGGCGAAGAGGGTTTTTTCCGTTGTCGGAGTCAAGCATGAGGTACGCCGGTGGCGGCAGCTCGTCGCGGCGGAGTAAGTCCATCGCTAGCCCCATGTTCTTAAGGTCTTCCGTATTGACCTCGGCAGCTGGCGCGGCGGGGTTTTCGTCGAGCCGGCTGAGATGCGGAGATCCCGAGGCGCTGCTTTCGCCGGAGAGGTTCAACAGAAGATGA 1284 0.5818 MQMHHRHHPNSTTIMPPSSSHHWIWPPTPSPSPSPSPSATFTKSTLPPPSPSKSPVDFSPPLIAMVVVIAAAFLLVTYSRLIARHLTPPLHRLIRRFRRRRRTHSFLPSSSGDLDSLPYYYDSPFDPHIPPSSFSPYGLDDSVIKTIPFSLYAALYAGELNSTSSRRSSSRRDCAVCLFEFEDDDYVRTLPLCSHTFHVDCIDAWLRSHANCPLCRAGVLSAASPFTPMFAARIRPSLDDDAIFHRIAAEHTPTPPEDYRHATTAVSAAPEITVEVPEEGFNGRDFLLKRSYSFGFERSLASERMLVMEPATASPWRYRRGGSSSSFWSKRPSPFGSIGKPRVFSFRYYRGMKSPFFRRRGFFPLSESSMRYAGGGSSSRRSKSIASPMFLRSSVLTSAAGAAGFSSSRLRCGDPEALLSPERFNRR* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0659 427 MobiDBLite consensus disorder prediction 1 19 - -
Amo13g0659 427 Pfam Ring finger domain 173 216 IPR001841 -
Amo13g0659 427 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 26 396 IPR044675 -
Amo13g0659 427 MobiDBLite consensus disorder prediction 1 20 - -
Amo13g0659 427 ProSiteProfiles Zinc finger RING-type profile. 174 216 IPR001841 -
Amo13g0659 427 SUPERFAMILY RING/U-box 173 222 - -
Amo13g0659 427 SMART ring_2 174 215 IPR001841 -
Amo13g0659 427 CDD RING-H2_PA-TM-RING 173 216 - -
Amo13g0659 427 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 26 396 - -
Amo13g0659 427 MobiDBLite consensus disorder prediction 25 53 - -
Amo13g0659 427 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 220 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0659 Amo-Chr13 8131503 8133900 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0659 52 427 C3H Transcription Factor Family AT3G18930 52.882 7.68e-101 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0659 - K19041 gmx:100795347 495.352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0659 13 8131503 8133900 Amo13g0659 13 8131503 8133900 ECH