Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0646 TTTAAATTCTTATTTTTTGCAAAACCGCATCTGATCTTGTTATTCTTCCTCTCCAGTTTTGCATCATCAACGTTGAAAGAAAGCACCTTTGTGCAGATCTGGACAATATTTTTTTCCAGGCAGATCAAGAACTTCGATATACACTTTTTTGATATGATGAATACTTCAGCTGAGCAATCCTCCTTCTTCAAAGTCTTCCTTCCACAGTTTAGCTCTGAAAAATTGCTACTCCCAGAAGAGCATGTGGCATTGACAAGGATGAAAGAAAGGGTACCTGAGGAATTCATACTGAGAAATGGAAGAGGAGGAGCATGGAGGGTGAAGACAAGTTGCATTGGTGAGAAGGTGTGTTTTGATGATGGATGGAAGGAGTTTGTAAGTGATAATGGTATACAAGAAGCTTGTGTTATTATTGTTTTCAATCCGGATGGAAGCAGCACATTCGAGTTCAAGATCTTTGAAAAATCAATGTGTGAAAAGACACAAACGTTGGAGGAGGAGGCGGCAGTGGAGATGGAGGAACATGTTTTGTATTTGGTTTTAGGGGGAAATTACAATGATATTAAGGAGTATGGAGAAATTATTGCAACTTATATTGATCAACACAATCCATACTTTGTTGCCAAAATGAACAAATCCAGACCCAATGAATTGTTTTAG 660 0.3803 FKFLFFAKPHLILLFFLSSFASSTLKESTFVQIWTIFFSRQIKNFDIHFFDMMNTSAEQSSFFKVFLPQFSSEKLLLPEEHVALTRMKERVPEEFILRNGRGGAWRVKTSCIGEKVCFDDGWKEFVSDNGIQEACVIIVFNPDGSSTFEFKIFEKSMCEKTQTLEEEAAVEMEEHVLYLVLGGNYNDIKEYGEIIATYIDQHNPYFVAKMNKSRPNELF* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0646 219 ProSiteProfiles B3 DNA-binding domain profile. 60 156 IPR003340 GO:0003677
Amo13g0646 219 Pfam B3 DNA binding domain 62 155 IPR003340 GO:0003677
Amo13g0646 219 CDD B3_DNA 61 153 IPR003340 GO:0003677
Amo13g0646 219 Gene3D - 52 158 IPR015300 -
Amo13g0646 219 SUPERFAMILY DNA-binding pseudobarrel domain 57 158 IPR015300 -
Amo13g0646 219 PANTHER B3 DOMAIN-CONTAINING 55 167 - -
Amo13g0646 219 SMART B3_2 62 156 IPR003340 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0646 62 174 B3 DNA Binding Superfamily AT3G06160 31.858 2.60e-11 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo13g0646 B3 2.9e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0646 - - ahf:112736814 364.385