Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0645 ATGCCGCGCCCTTCTTTCCACAAGCTTGTTCTTCCTTCCACCATTCAATCTAGGCAATTGAGGATTCCAGATACTTTTCTGAATAGATATGGAGCTGACCTTTCTTCAATTGCTACCTTCTCGGTTCCTGATGGCAGCATTTGGCGTGTCAGATTAAAGAAGTTGGACAATGGATTTTGGTTTGTTGATGGCTGGGCAGAATTCGTTCAACGCTACTCCATCGGTGTTGGATACTTGATAGTATTCCGATACGAAGGAAAGTCGACTTTCATTGTTCGTATCTTTAATTTGGCCACTTCTGAGATAAGCTATCAGTCGCCTGTACGAAGCAGTAACGAAGGGGCTTACTTTGCAAACCGTCTTAAGATTTTTGAAGAATTGGAAGATGAAGACTCCGCTGAATATTCATCACCTTCCGGCCTTACTCCCGGTGCATTGCAAAATAAATTTACCCCTGAGAAGAATTATACTCCTCCACCATTGCAGAATCTATTTAATGGGTCCAAACTTAATAGTGTAAACTGGGGCGATAGTGCAAACACCCTCTCTTCAAGAAGTGCCAATTCGCTAGACAGTCAGTTGACCAGAGATATAGGTGTTCAGTTTAATGCAATTGAGTTTAAAAGGTCTACCGACGAATTGAAGTTGCGTACTTCTGTTGACGAAAAGGAGAAGAAAGCTCCAAGAAAGAAGCGAAAATCAGATGGCCAGGAACCCTCTGAGCACCAAGAAGAGGAGGCAGAGATGCGGTTTAGATTCTATGAAAGTGCATCGGCAAGAAAAAGAACTGTGACAGCAGAGGAAAGAGAAAGAGCCGTGAATGCAGCGAAGGCGTTCGAACCACTTAATCCTTTCTGTCGTGTTGTCCTGCGGCCGTCCTACTTGTATAGGGGATGCATAATGTATTTGCCATCTTGCTTCGCGGAAAAGCATTTGAATGAGGTTTCAGGATTCATCAAACTTCAGCTCTCCGACGGGAGACAGTGGCCTGTTCGCTGCCTCTATAGAGGAGGCAGAGCTAAGCTGAGCCAGGGGTGGTTTGAATTCGCGATAGAGAACAACCTTGGCGAGGGAGACGTCTGTGTGTTTGAGCTCCTTCCGATGAAGGAGGTGATACTTCAAGTTACACTGTTTCGCGTCACTGAGGACGATGGATTCTTCCTCCCTCCTCCTCTGCCCCAGCCGAGCCAAAATCTCGTGAGAACTAAAGCAGTTTTGTTGCCTTACTTCTGTGTGACCGGTTATTCATCTGAACATCAGCTTCACTTGGAAAAAACTTTGCCTTCTTTCTTGGTCTTCACCCCCCAAAAAATGCCTCGCCCTTCTTTCCATAAGGTTATTCTAACCACCACTCTCCAATCCAAGCAACTGAGAGTACCAGATAATTTTCTGAGAAAATATGGGGGTGAGCTTTCCTCCTTTGTTAACCTGTCTGTTCCCGATGGTAGTTCGTGGCGTGTGGGACTGAAAAAGGTAGACAACAAATTTTGGTTCATTGATGGTTGGGCAGAATTTGTTCAGCGCTATTCCATCGGTGTTGGATACCTTTTAGCTTTCAGATACGAAGGAAAGTCGAATTTCAGTGTTCACATTTTTAATTTGGCTACTGCTGAGATAAATTATCAATCACCCACACGAAGCAGCAATGAAGGATCTTACTTTGCGAATCGCCTCAAAATTTTTGAAGAAATGGAAGATGAAGACTTCACTGAATCCAAACCAGCCTTGCAGAATCTATTTAACGGGTCAAAACTTAATAGTGTAAACTGGGGTGAGGGTGGGAATGCTCTTCCTGCGAAAAGTGCCAGAGATATAGGTCTTCAGTTTAATGCAATTGAGTTTAAAAAATCTACTGATGAACTGAAATTGCGTGCTTCTTTCGAGGAAAAGGCCAAAAAAACTGCAAGAAAGAAGCGTAAATCTGAACCTGGAAGTGCAGAAGGCCAGGAAGCTTCTGATGGACAAGAAGAGGAGAGAGAAATGCGCATTAGATTCTATGAAAGTGCTTCTGCAAGGAAAAGAACCGTGACGGCTGAGGAAAGAGAAAAGGCTGTCAACGAAGCGAAAGCATTTGAACCATCTAATCCTTTCTGCCGGGTTGTCCTGCGGCCCTCCTATCTATATAGGGGATGCATAATGTACTTGCCATCTTGCTTTGCAGAAAAGTATTTGAATGGTGTTTCGGGATTCATCAAACTTCAACACCCTGATGGGAGACAGTGGCCAGTTCGCTGCCTTTATCGAACGGGTAGGGCTAAGTTAAGCCAAGGATGGTTCGAATTTGCGATAGACAACAATCTAGGCGAAGGCGACGTCTGTGTGTTTGAGCTGCTTAGAATGAAGGAAGTAGTGCTGCAAGTTACTATATTTCGTGTCACCGATGAGGCAGAATTCTTGAGCCCTCCTCCTTTGCTGCTGACCCAAAATGTGAACCAGGCCAAGCTGTTGAGAAGCCCCATGCAGCAGCATCACCTTACATCACCTAAAGGATACATCATACATCCATCATTGGAAGAGTATTGCGTTTGGTTTTTTGTAGGAAAAAGAAGTGTGTCAAAATAG 2562 0.4434 MPRPSFHKLVLPSTIQSRQLRIPDTFLNRYGADLSSIATFSVPDGSIWRVRLKKLDNGFWFVDGWAEFVQRYSIGVGYLIVFRYEGKSTFIVRIFNLATSEISYQSPVRSSNEGAYFANRLKIFEELEDEDSAEYSSPSGLTPGALQNKFTPEKNYTPPPLQNLFNGSKLNSVNWGDSANTLSSRSANSLDSQLTRDIGVQFNAIEFKRSTDELKLRTSVDEKEKKAPRKKRKSDGQEPSEHQEEEAEMRFRFYESASARKRTVTAEERERAVNAAKAFEPLNPFCRVVLRPSYLYRGCIMYLPSCFAEKHLNEVSGFIKLQLSDGRQWPVRCLYRGGRAKLSQGWFEFAIENNLGEGDVCVFELLPMKEVILQVTLFRVTEDDGFFLPPPLPQPSQNLVRTKAVLLPYFCVTGYSSEHQLHLEKTLPSFLVFTPQKMPRPSFHKVILTTTLQSKQLRVPDNFLRKYGGELSSFVNLSVPDGSSWRVGLKKVDNKFWFIDGWAEFVQRYSIGVGYLLAFRYEGKSNFSVHIFNLATAEINYQSPTRSSNEGSYFANRLKIFEEMEDEDFTESKPALQNLFNGSKLNSVNWGEGGNALPAKSARDIGLQFNAIEFKKSTDELKLRASFEEKAKKTARKKRKSEPGSAEGQEASDGQEEEREMRIRFYESASARKRTVTAEEREKAVNEAKAFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAEKYLNGVSGFIKLQHPDGRQWPVRCLYRTGRAKLSQGWFEFAIDNNLGEGDVCVFELLRMKEVVLQVTIFRVTDEAEFLSPPPLLLTQNVNQAKLLRSPMQQHHLTSPKGYIIHPSLEEYCVWFFVGKRSVSK* 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0645 853 PANTHER B3 DOMAIN-CONTAINING 1 410 - -
Amo13g0645 853 CDD B3_DNA 284 379 IPR003340 GO:0003677
Amo13g0645 853 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 648 822 - -
Amo13g0645 853 SUPERFAMILY DNA-binding pseudobarrel domain 691 792 IPR015300 -
Amo13g0645 853 SMART B3_2 6 98 IPR003340 GO:0003677
Amo13g0645 853 SMART B3_2 286 381 IPR003340 GO:0003677
Amo13g0645 853 SMART B3_2 443 535 IPR003340 GO:0003677
Amo13g0645 853 SMART B3_2 698 793 IPR003340 GO:0003677
Amo13g0645 853 MobiDBLite consensus disorder prediction 218 247 - -
Amo13g0645 853 ProSiteProfiles B3 DNA-binding domain profile. 442 535 IPR003340 GO:0003677
Amo13g0645 853 SUPERFAMILY DNA-binding pseudobarrel domain 439 533 IPR015300 -
Amo13g0645 853 Pfam B3 DNA binding domain 9 96 IPR003340 GO:0003677
Amo13g0645 853 Pfam B3 DNA binding domain 451 532 IPR003340 GO:0003677
Amo13g0645 853 Pfam B3 DNA binding domain 701 791 IPR003340 GO:0003677
Amo13g0645 853 Pfam B3 DNA binding domain 289 379 IPR003340 GO:0003677
Amo13g0645 853 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 1 410 - -
Amo13g0645 853 CDD B3_DNA 696 791 IPR003340 GO:0003677
Amo13g0645 853 SUPERFAMILY DNA-binding pseudobarrel domain 280 380 IPR015300 -
Amo13g0645 853 SUPERFAMILY DNA-binding pseudobarrel domain 3 96 IPR015300 -
Amo13g0645 853 Gene3D - 263 383 IPR015300 -
Amo13g0645 853 Gene3D - 675 795 IPR015300 -
Amo13g0645 853 CDD B3_DNA 441 533 IPR003340 GO:0003677
Amo13g0645 853 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Amo13g0645 853 ProSiteProfiles B3 DNA-binding domain profile. 698 793 IPR003340 GO:0003677
Amo13g0645 853 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 438 608 - -
Amo13g0645 853 PANTHER B3 DOMAIN-CONTAINING 648 822 - -
Amo13g0645 853 PANTHER B3 DOMAIN-CONTAINING 438 608 - -
Amo13g0645 853 Gene3D - 436 535 IPR015300 -
Amo13g0645 853 Gene3D - 1 98 IPR015300 -
Amo13g0645 853 ProSiteProfiles B3 DNA-binding domain profile. 286 381 IPR003340 GO:0003677
Amo13g0645 853 CDD B3_DNA 4 96 IPR003340 GO:0003677
Amo13g0645 853 MobiDBLite consensus disorder prediction 632 659 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0645 Amo-Chr13 8013115 8026122 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0645 438 797 B3 DNA Binding Superfamily AT3G18990 55.000 6.55e-123 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo13g0645 B3 2.8e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0645 - - adu:107476734 757.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0645 13 8013115 8026122 Amo13g0645 13 8013115 8026122 ECH