Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0630 ATGTCCCAGTGCCTATCAAATAACAAAAGAGCAGCTTTAACAGAGATAATTGATGTGTCACGAGCTGTGTGTCGTGCGCATAGTTTGCCACTGGCATTGACATGGATCCCCTGTTATTATAGTGAGGGGATAGGAGATGAAGCTTCAAGAATACGGATTAAAGATGGGTGTAAAATTCCCGGTGAAAAAACTGTACTATGCATTGAAGAATCAGCTTGCTATATAAATGATATTGTGGTAGGAGGATTTGTTCGTGCATGTGTTAAACATTATCTCGAGGAAGGGCAAGGTGTAGCTGGGAAAGCGCTTCAATCAAATCGTCCATTCTTCTATTCCGATGTGAAGGCCTATAATATTAGTGAATATCCCATTGTTCACCATGCGCGAAAATATAAGTTGAATGCTGCCGTTGCAGTCAGGCTAAGGAGTATTCATACCAATGATGATGATTACATAATAGAATTCTTTCTACCTGTCATTATGAATGGAAGTCAAGAACAGCAACTTTTATTAGACAATCTATCAGATACTATGCAGAGAATGTGTCAGAGTTTGAGGATAGTTTCAGATGATGAATTATACGGGATAGAAGGTTCGCAAGTGCAGTTTTCAAAGGAAGAAGGCTCGAGTTTTTTCTCTATGTATAGGGGAAATTCTCATATGGCGCCGGAAGGTGACCATGATTCGGTCCAGCCTATGTCCTTGACAAACAATGAAACTGAAGCTGCTCATAACCAGGCAATGGATGGATCAAGAAAGCAGACTGAGAAAAAGAAAAGTACAGTGGAGAAGAATGTTAGCTTGAGTGTTCTCCAGCAATATTTCTCCGGTAGTCTTAAAGATGCGGCTAAAAGCCTTGGTGTTTGCCCAACAACCCTGAAAAGGATATGCAGGCAACACGGAATCGCAAGATGGCCATCGCGCAAGATCAATAAAGTTAATCATTCAAAGCCAATAGGCATGGATGATGGTGGATTACGGCAGGAACCCTTTCCGGTTTCTATTTTGGAAAGTTCTAGGTGTGATATAGTATATCACAGTCCAAACACCCTGGTTGCCGATGAGATGGAAAATTATCTGAATGGGGCTGACAAGCTCGGCGAGCATCACAATCCCACTACTTCAAGCATGTCAGACTCTGAGGGGATAGGAGATGAAGCTTCAAGAATACGGACTAAAGATGGGCGTAAAATTCCCGGTGAAAAAACTGTACTATGCATTGAAGAATCAGCTTGCTATACAAATGATATTGTGGTAGGAGGATTTGTTCGTGCATGTGTTGAACATTATCTCGAGGAAGGGCAAGGTGTAGCTGGGAAAGCTCTTCAATCAAATCGTCCATTCTTCTATCCCGATGTGAAGGCCTATAATATTAGTGAATATCCCCTTGTTCACCATGCGCGAAAATATAAGTTGAATGCCGCCGTTGCAATCAGGCTAAGGAGTATACATACCAATGATGATGATTATATAATAGAATTCTTTCTACCTGTCAATATGAATGGAAGTGAAGAACAGCAACTTTTATTAGACAATCTAGCAGGTACTATGCAGAGAAAGTGTCAGACTTTGAGGAAAGTTTCGGATGCTGAATTACATGGGATAGAAGGCTCGAGTTTTTGCTCTATGTCTAGGGGAAACTCTCATATGGCGCCGGATGGTGACCATGATTCGGTCCAGCCAATGTCCGTGACAAACAATGAAACGGAAGCTGCTCATAACCAGGCAATGGAGGGATCAAGAAAGCAGATTGAGAAAAAGAGAAGTCCAGTGAAGAAGAATTTTAGCTTGAGTGTTCTCCAGCAATACTTCTCCGGTAATCTTAAAGATGCGGCTAAAAGCCTTGGTGTTTGCCCAACAACCCTGAAAAGGATATGCAGGCAACACGGAATTGCAAGATGGCCATCGCGCAAGATTAACAAAGTGAATCGCTCGTTAAAGAAAATACAAACCGTGCTCGACTCGGGTGTGGAAGGAGGACTGAAGTTTGATCCTTACAAGGGGGGATTTATGTCAGGAGGATCAAGCAACCAAGAAATTAATGCACATAAAAGTTCTCTCTTCCGGAAGAAATGTTCTGTAAAATATCCTGATCCTGCAGCAAAAGATGCAGTCACCATATCTCCGGCATCCGGTAGCAAAGGTGAGAATTTAGCCGTTAACCAGCTTCTGCATTCAGACATACTTATCTCTAATTCCAAGGGTGAGTTGAAGAAAAACAAAGCTTTTTCTGTTGATGTAGATTCAAAGCCAATAGCCATGGGTGATGGTGGATTACGCCAAGAACCCTTTCCGGTTTCTATTTTGGAAAGTTCTAGGTGTGATGTAGCATATCACAGTCCAAACTCCCTGGTTGCCGATGAGATGGAAACTTATCTGAATGGGGCTGACAAGCTCGGCGAGCATCACAATCCCACTACTTCAAGCATGACAGACTCGTCGAGTGGCTCTTGCTCAATTTTGCGCCCCAGCTCATCTGGCTCTCCGAAATTTGAGAATCGGAAACATTTGAAAGCCAAATCACCTTGTGTTCGTAGGGGATCAAAAATTATTGTCAAAGCTGCCTACGGAGAAAATATTATCCGTTTCAAGTTTGATCCTGCAGCTGGTTGTCTCCAGCTCTATGAAGAAGTTGCAACAAGATTCAAATTACAAATCGGATCTTTCCAACTCGAGTATCTCGACGATGAAGACGAATGGGTGAGGATGGTAACTGACACAGATTTGGAAGAATGCATAGAAATGTTTGATGATCTTGGCACCGCTGTGAAATTTCTTGTTCGCGAGCCGTGCAGTAACAGTTGA 2805 0.4242 MSQCLSNNKRAALTEIIDVSRAVCRAHSLPLALTWIPCYYSEGIGDEASRIRIKDGCKIPGEKTVLCIEESACYINDIVVGGFVRACVKHYLEEGQGVAGKALQSNRPFFYSDVKAYNISEYPIVHHARKYKLNAAVAVRLRSIHTNDDDYIIEFFLPVIMNGSQEQQLLLDNLSDTMQRMCQSLRIVSDDELYGIEGSQVQFSKEEGSSFFSMYRGNSHMAPEGDHDSVQPMSLTNNETEAAHNQAMDGSRKQTEKKKSTVEKNVSLSVLQQYFSGSLKDAAKSLGVCPTTLKRICRQHGIARWPSRKINKVNHSKPIGMDDGGLRQEPFPVSILESSRCDIVYHSPNTLVADEMENYLNGADKLGEHHNPTTSSMSDSEGIGDEASRIRTKDGRKIPGEKTVLCIEESACYTNDIVVGGFVRACVEHYLEEGQGVAGKALQSNRPFFYPDVKAYNISEYPLVHHARKYKLNAAVAIRLRSIHTNDDDYIIEFFLPVNMNGSEEQQLLLDNLAGTMQRKCQTLRKVSDAELHGIEGSSFCSMSRGNSHMAPDGDHDSVQPMSVTNNETEAAHNQAMEGSRKQIEKKRSPVKKNFSLSVLQQYFSGNLKDAAKSLGVCPTTLKRICRQHGIARWPSRKINKVNRSLKKIQTVLDSGVEGGLKFDPYKGGFMSGGSSNQEINAHKSSLFRKKCSVKYPDPAAKDAVTISPASGSKGENLAVNQLLHSDILISNSKGELKKNKAFSVDVDSKPIAMGDGGLRQEPFPVSILESSRCDVAYHSPNSLVADEMETYLNGADKLGEHHNPTTSSMTDSSSGSCSILRPSSSGSPKFENRKHLKAKSPCVRRGSKIIVKAAYGENIIRFKFDPAAGCLQLYEEVATRFKLQIGSFQLEYLDDEDEWVRMVTDTDLEECIEMFDDLGTAVKFLVREPCSNS* 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0630 934 Pfam RWP-RK domain 595 642 IPR003035 -
Amo13g0630 934 Pfam RWP-RK domain 265 313 IPR003035 -
Amo13g0630 934 MobiDBLite consensus disorder prediction 240 263 - -
Amo13g0630 934 Gene3D - 846 925 - -
Amo13g0630 934 PANTHER PROTEIN NLP8 3 316 IPR045012 GO:0003700
Amo13g0630 934 PANTHER PROTEIN NLP8 380 931 IPR045012 GO:0003700
Amo13g0630 934 ProSiteProfiles RWP-RK domain profile. 245 333 IPR003035 -
Amo13g0630 934 MobiDBLite consensus disorder prediction 801 828 - -
Amo13g0630 934 SUPERFAMILY CAD & PB1 domains 845 931 - -
Amo13g0630 934 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 3 316 - -
Amo13g0630 934 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 380 931 - -
Amo13g0630 934 ProSiteProfiles PB1 domain profile. 849 931 IPR000270 GO:0005515
Amo13g0630 934 Pfam PB1 domain 852 924 IPR000270 GO:0005515
Amo13g0630 934 SMART PB1_new 849 930 IPR000270 GO:0005515
Amo13g0630 934 MobiDBLite consensus disorder prediction 798 839 - -
Amo13g0630 934 ProSiteProfiles RWP-RK domain profile. 574 663 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0630 Amo-Chr13 7828518 7838230 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0630 378 929 NLP Transcription Factor Family AT3G59580 45.517 4.82e-136 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Amo13g0630 PB1 3.1e-12 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0630 - - aip:107632301 1083.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0342 18 4634993 4640670 Amo13g0630 13 7828518 7838230 PCT
Amo13g0630 13 7828518 7838230 Amo18g0342 18 4634993 4640670 PCT