Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0618 ATGGATAAGGACAAATCCCCTGGTCATGGTGGAGGTTTTCCTCCTTCTTCTGGCCGTTTTTCGGGATTCTCAGCCTCCGCAGCCCCTTTTAATGTGAAATCAGAGTTACCATCTTCATCAGCATTGCTTCCTCCTCTGCCAGTTCCGGCTGCAACCTCGGACTCTGCTAGTTTTAGTCATGACATTAGCAGAATGCCTGATAACCCTCCGAGAAATCGAGGCCATAGGCGTGCTCATTCAGAGATTCTCACTTTGCCGGATGATATTAGCTTTGAAAATGACCTTGGCATAGTTGGAGGAGGTGCTGATGGGCCCTCATTCTCCGATGACACTGAGGAAGACCTACTGTCCATGTACCTTGATATGGATAAATTCAATTTGCCGGCCGCTACAGGCGAGTTTGGAATTGGGGAGACTTCAATTGGTGGTGCAGCAACAGCAGCAGCAGTAGCATTGAGTTCAGCATTGGCATCAGGAGCCGGTGCCGCCTCTTCAGAAGACAACACTGCTGTTGGGACTAATGGAAGGCCTAGAGTGAGGCACCAGCATAGCCAGTCCATGGATGGATCCACAACCATCAAACCTGAGATTTTAGTCTCTGGCTTGGAAGAGGCCTCAGCAGTTGATTCCAAGAAGGCTATTTCGGCTGCCAAGCTTGCCGAGCTTGCCTTAATTGATCCAAAGCGTGCCAAGAGGATATGGGCAAATAGACAGTCTGCTGCTAGGTCGAAAGAAAGGAAGATGCGCTACATCGCCGAGCTTGAAAAGAGGGTACAGACATTGCAAACAGAAGCAACATCCTTGTCTGCACAATTAACTATCTTGCAGAGGGATACAGGTGGACTGAATGCCGAAAACAATGAGCTGAAAGTGCGGGTGCAATCGATGGAGCAACAAGTTCACTTGCAAGATGCGCTTAACGATGCATTAAAAGAGGAAATTCAGCATTTGAGAGTCCTTACCGGACAAGCTTTGCCAAATGGAGGAGCACCTATGAACTTTGCTTCATCAGTTGGAGGAGAACAACAATTCCAATCCAAAAATCAGTCCATGCACACCATTTTAGCTGCCCAGCAGTTACAACAACTCCAAATTCGCTCGCGGAAGCAACAGCATCAACAGCAGCTATTCCAGAACCATCAACCTCAGCATCTGCAGCAGTTTCAGCAGCCACAACCACCACAGCAACAACAGGAACATTAG 1203 0.483 MDKDKSPGHGGGFPPSSGRFSGFSASAAPFNVKSELPSSSALLPPLPVPAATSDSASFSHDISRMPDNPPRNRGHRRAHSEILTLPDDISFENDLGIVGGGADGPSFSDDTEEDLLSMYLDMDKFNLPAATGEFGIGETSIGGAATAAAVALSSALASGAGAASSEDNTAVGTNGRPRVRHQHSQSMDGSTTIKPEILVSGLEEASAVDSKKAISAAKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELEKRVQTLQTEATSLSAQLTILQRDTGGLNAENNELKVRVQSMEQQVHLQDALNDALKEEIQHLRVLTGQALPNGGAPMNFASSVGGEQQFQSKNQSMHTILAAQQLQQLQIRSRKQQHQQQLFQNHQPQHLQQFQQPQPPQQQQEH* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0618 400 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 226 289 IPR004827 GO:0003700|GO:0006355
Amo13g0618 400 MobiDBLite consensus disorder prediction 1 20 - -
Amo13g0618 400 MobiDBLite consensus disorder prediction 161 190 - -
Amo13g0618 400 Gene3D - 227 279 - -
Amo13g0618 400 Coils Coil 244 278 - -
Amo13g0618 400 CDD bZIP_plant_RF2 229 278 IPR044759 GO:0003700|GO:0006355
Amo13g0618 400 SUPERFAMILY Leucine zipper domain 228 278 IPR046347 GO:0003700|GO:0006355
Amo13g0618 400 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 7 385 - -
Amo13g0618 400 SMART brlzneu 224 288 IPR004827 GO:0003700|GO:0006355
Amo13g0618 400 MobiDBLite consensus disorder prediction 34 77 - -
Amo13g0618 400 Coils Coil 293 313 - -
Amo13g0618 400 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 7 385 - -
Amo13g0618 400 MobiDBLite consensus disorder prediction 367 400 - -
Amo13g0618 400 Pfam bZIP transcription factor 228 277 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0618 Amo-Chr13 7674520 7677516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0618 19 357 bZIP Transcription Factor Family AT1G06070 67.941 7.11e-153 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Amo13g0618 bZIP_1 3.3e-08 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0618 - - adu:107476759 624.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0020 18 883818 887012 Amo13g0618 13 7674520 7677516 PCT
Amo13g0618 13 7674520 7677516 Amo18g0020 18 883818 887012 PCT